DRSC/TRiP Functional Genomics Resources

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Protein Alignment scu and sdr16c5a

DIOPT Version :9

Sequence 1:NP_523396.1 Gene:scu / 32789 FlyBaseID:FBgn0021765 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_998043.2 Gene:sdr16c5a / 405814 ZFINID:ZDB-GENE-040426-2049 Length:306 Species:Danio rerio


Alignment Length:248 Identity:60/248 - (24%)
Similarity:97/248 - (39%) Gaps:44/248 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 IKNAVSLVTGGASGLGRATAERLAKQGASVILADLPSSKGNEVAKELGDK----VVFVPVDVTSE 62
            :...:.|:||..||:||..|...|....|::|.|:......|.|:::.:|    |.:...|.:..
Zfish    34 VSGEIVLITGSGSGIGRLMALEFASLDVSLVLWDINVDGLKETAEQVKEKGASRVHYYQCDCSDR 98

  Fly    63 KDVSAALQTAKDKFGRLDLTVNCAGTATAVKTFNFNKNVAHRLEDFQRVININTVGTFNVIRLSA 127
            :.|.......|.:.|.:.:.:|.||..:..|..:....:      .::.:.:|.:..|...:...
Zfish    99 EAVYRVADQVKSEIGDVTILINNAGIVSGKKFMDTPDAL------IEKTLRVNAMSHFWTYKAFL 157

  Fly   128 GLMGANEPNQDGQRGVIVNTASVAAFDGQIGQAAYSASKAAVVGMTLPIARDL---STQGIRICT 189
            ..|      .|...|.:|:.||.|...|..|.|.|.|||.|.||....:|.:|   ...||:...
Zfish   158 PAM------MDKNHGHLVSVASSAGLIGVNGLADYCASKFAAVGFAESVALELLSAGKDGIKTTI 216

  Fly   190 IAPGLFNT--------------PML-----------AALPEKVRTFLAKSIPF 217
            :.|.|.||              |||           |.|.::|...|.:|:.|
Zfish   217 VCPFLINTGLFDGCGTKWPLLMPMLEPDYVAKRIVSAILTDQVFVLLPRSLYF 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scuNP_523396.1 HSD10-like_SDR_c 3..255 CDD:187629 60/247 (24%)
sdr16c5aNP_998043.2 adh_short 37..227 CDD:278532 51/201 (25%)
17beta-HSDXI-like_SDR_c 38..280 CDD:187598 60/244 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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