DRSC/TRiP Functional Genomics Resources

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Protein Alignment scu and firl

DIOPT Version :9

Sequence 1:NP_523396.1 Gene:scu / 32789 FlyBaseID:FBgn0021765 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_001033900.2 Gene:firl / 34627 FlyBaseID:FBgn0032405 Length:318 Species:Drosophila melanogaster


Alignment Length:270 Identity:70/270 - (25%)
Similarity:111/270 - (41%) Gaps:40/270 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 IKNAVSLVTGGASGLGRATAERLAKQGASVILADLPSSKGN----EVAKELG-DKVVFVPVDVTS 61
            :...:.|:||...|:||..|...|..|::|:..|: ..|.|    |.||.|. .:|.....||:.
  Fly    53 VSGEIVLITGTGHGIGRELALHYASLGSTVVCVDI-DGKNNLQTVEKAKRLNLGEVYSYSCDVSK 116

  Fly    62 EKDVSAALQTAKDKFGRLDLTVNCAGTATAVKTFNFNKNVAHRLEDFQRVININTVGTFNVIRLS 126
            ..:|:|.....|...|.:.:.||..|....      :..:....|:.|||.::|....|..|:..
  Fly   117 RDEVTALADRIKSDVGCISVLVNNVGIMPT------HPILQQSAEEIQRVFDVNVFSQFWTIQAF 175

  Fly   127 AGLMGANEPNQDGQRGVIVNTASVAAFDGQIGQAAYSASKAAVVGMTLPIARDLSTQG-----IR 186
            ...|      |:..||.|:..:|:|...|......|.|:|.||.|:...:..:| .||     ||
  Fly   176 LPHM------QEKCRGHIICMSSIAGLVGISNLVPYCATKFAVRGLMEALHAEL-RQGPFRDLIR 233

  Fly   187 ICTIAPGLFNTPMLAALPEKVRTFLAKSIPFPQRLG--EPSEYAHLVQAIYENPLLNGEV----I 245
            ..||.|.:.||. |...|:         :.||..||  :|.:.|..:...:...|:...:    :
  Fly   234 TTTIFPYMTNTG-LCKHPK---------VKFPSILGLLDPKQVAKRIVEAHRTDLMEVTIPSCLL 288

  Fly   246 RIDGALRMMP 255
            .|:...|::|
  Fly   289 YINNWTRLLP 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scuNP_523396.1 HSD10-like_SDR_c 3..255 CDD:187629 69/267 (26%)
firlNP_001033900.2 adh_short 56..246 CDD:278532 58/204 (28%)
17beta-HSDXI-like_SDR_c 57..299 CDD:187598 70/266 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447624
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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