DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6867 and Negr1

DIOPT Version :10

Sequence 1:NP_573262.2 Gene:CG6867 / 32782 FlyBaseID:FBgn0030887 Length:949 Species:Drosophila melanogaster
Sequence 2:XP_063138498.1 Gene:Negr1 / 59318 RGDID:708416 Length:423 Species:Rattus norvegicus


Alignment Length:323 Identity:83/323 - (25%)
Similarity:125/323 - (38%) Gaps:89/323 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   429 IPPSITDIQVPDFQRTVIVEEGRSLNLSCTATGTPTPQVEWRREDGRTINVNGVEMASISGQFLR 493
            :||.|.||     ...:.:.||.::.|:|.|||.|.|.:.||       :::.......:||:|.
  Rat   131 VPPKIYDI-----SNDMTINEGTNVTLTCLATGKPEPAISWR-------HISPSAKPFENGQYLD 183

  Fly   494 FTNITRHQMAAYTCFANNGIAPVANATYLVEVQFAPMISVYRQMIYAEYQS-------SATLECL 551
            ...|||.|...|.|.|.|.::........|.|.|||.|.        |.:|       |..:.|.
  Rat   184 IYGITRDQAGEYECSAENDVSFPDVKKVRVVVNFAPTIQ--------EIKSGTVTPGRSGLIRCE 240

  Fly   552 VEAFPEAIRYW----ERAYDGKILDPSDKYGIESYPEGFKTTMRLTISNLRKDDFGYYHCVARNE 612
            ....|.....|    :|.::|       :.||  ..:.|.|...||::|:.::.||.|.|||.|:
  Rat   241 GAGVPPPAFEWYKGEKRLFNG-------QQGI--IIQNFSTRSILTVTNVTQEHFGNYTCVAANK 296

  Fly   613 L---NATM-VNFEIAP----------QDPNSETPYV-----GNNMKVYGQRPPE------SEC-- 650
            |   ||:: :|..|.|          |.|::.|.||     .:.:....|:..:      ..|  
  Rat   297 LGTTNASLPLNQIIEPTTSSPVTSPGQYPHTFTKYVWVLFLSSKISALSQKHSQLLLGHRHGCGS 361

  Fly   651 PVCD-QC------PDPSLYQCKDSILNNFEIQATGN-----------LSYPGLPKRPKTCYLY 695
            .||. .|      |..|...|...:|   |...|.:           :||| ||.:.:...:|
  Rat   362 GVCHLSCLSVMWSPSVSYEWCLTRLL---EYIVTSHGFVSHSKHCELISYP-LPSKTEVLQIY 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6867NP_573262.2 gly_rich_SclB <257..>409 CDD:468478
Ig 436..525 CDD:472250 24/88 (27%)
Ig strand B 453..457 CDD:409353 1/3 (33%)
Ig strand C 466..470 CDD:409353 0/3 (0%)
Ig strand E 490..494 CDD:409353 2/3 (67%)
Ig strand F 504..509 CDD:409353 2/4 (50%)
Ig strand G 518..521 CDD:409353 0/2 (0%)
Ig_3 529..611 CDD:464046 23/92 (25%)
OLF 694..939 CDD:460482 1/2 (50%)
Negr1XP_063138498.1 None
Blue background indicates that the domain is not in the aligned region.

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