DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6867 and Negr1

DIOPT Version :9

Sequence 1:NP_573262.2 Gene:CG6867 / 32782 FlyBaseID:FBgn0030887 Length:949 Species:Drosophila melanogaster
Sequence 2:XP_038958934.1 Gene:Negr1 / 59318 RGDID:708416 Length:362 Species:Rattus norvegicus


Alignment Length:255 Identity:67/255 - (26%)
Similarity:99/255 - (38%) Gaps:58/255 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   429 IPPSITDIQVPDFQRTVIVEEGRSLNLSCTATGTPTPQVEWRREDGRTINVNGVEMASISGQFLR 493
            :||.|.||     ...:.:.||.::.|:|.|||.|.|.:.||       :::.......:||:|.
  Rat   131 VPPKIYDI-----SNDMTINEGTNVTLTCLATGKPEPAISWR-------HISPSAKPFENGQYLD 183

  Fly   494 FTNITRHQMAAYTCFANNGIAPVANATYLVEVQFAPMISVYRQMIYAEYQS-------SATLECL 551
            ...|||.|...|.|.|.|.::........|.|.|||.|.        |.:|       |..:.|.
  Rat   184 IYGITRDQAGEYECSAENDVSFPDVKKVRVVVNFAPTIQ--------EIKSGTVTPGRSGLIRCE 240

  Fly   552 VEAFPEAIRYW----ERAYDGKILDPSDKYGIESYPEGFKTTMRLTISNLRKDDFGYYHCVARNE 612
            ....|.....|    :|.::|       :.||  ..:.|.|...||::|:.::.||.|.|||.|:
  Rat   241 GAGVPPPAFEWYKGEKRLFNG-------QQGI--IIQNFSTRSILTVTNVTQEHFGNYTCVAANK 296

  Fly   613 LNATMVNFEIAPQDPNSETPYVGNNMKVYGQRPPESECPVCDQCPDPSLYQCKDSILNNF 672
            |..|           |:..|.   |..:    .|.:..||....|..:.|....|..:.|
  Rat   297 LGTT-----------NASLPL---NQII----EPTTSSPVTSPAPSTAQYGITGSACDLF 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6867NP_573262.2 Collagen 306..364 CDD:189968
IG_like 442..525 CDD:214653 23/82 (28%)
IGc2 449..511 CDD:197706 21/61 (34%)
IG_like 544..612 CDD:214653 20/78 (26%)
Ig 546..612 CDD:143165 18/69 (26%)
OLF 694..937 CDD:280371
Negr1XP_038958934.1 FR1 38..55 CDD:409353
Ig strand A' 40..46 CDD:409353
IG_like 41..129 CDD:214653
Ig strand B 48..56 CDD:409353
CDR1 56..60 CDD:409353
FR2 61..68 CDD:409353
Ig strand C 61..67 CDD:409353
CDR2 69..79 CDD:409353
Ig strand C' 71..74 CDD:409353
Ig strand C' 76..79 CDD:409353
FR3 80..115 CDD:409353
Ig strand D 84..91 CDD:409353
Ig strand E 94..100 CDD:409353
Ig strand F 107..115 CDD:409353
CDR3 116..120 CDD:409353
Ig strand G 120..129 CDD:409353
FR4 122..129 CDD:409353
Ig strand A' 139..144 CDD:409353 0/4 (0%)
IGc2 146..204 CDD:197706 22/64 (34%)
Ig strand B 150..157 CDD:409353 2/6 (33%)
Ig strand C 163..168 CDD:409353 2/11 (18%)
Ig strand C' 170..172 CDD:409353 0/1 (0%)
Ig strand E 180..186 CDD:409353 2/5 (40%)
Ig strand F 193..200 CDD:409353 2/6 (33%)
Ig strand G 207..215 CDD:409353 1/7 (14%)
Ig_3 219..295 CDD:404760 23/92 (25%)
putative Ig strand A 219..225 CDD:409353 3/13 (23%)
Ig strand B 235..239 CDD:409353 0/3 (0%)
Ig strand C 248..252 CDD:409353 0/3 (0%)
Ig strand E 274..278 CDD:409353 1/3 (33%)
Ig strand F 288..293 CDD:409353 2/4 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 57 1.000 Domainoid score I10613
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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