DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6867 and Lsamp

DIOPT Version :9

Sequence 1:NP_573262.2 Gene:CG6867 / 32782 FlyBaseID:FBgn0030887 Length:949 Species:Drosophila melanogaster
Sequence 2:XP_038944182.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:211 Identity:61/211 - (28%)
Similarity:95/211 - (45%) Gaps:36/211 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   429 IPPSITDIQVPDFQRTVIVEEGRSLNLSCTATGTPTPQVEWRREDGRTINVNGVEMASISGQFLR 493
            :||.|::|     ...|.|.||.::.|.|.|.|.|.|.:.||..........|.|      ::|.
  Rat   147 VPPKISNI-----SSDVTVNEGSNVTLVCMANGRPEPVITWRHLTPLGREFEGEE------EYLE 200

  Fly   494 FTNITRHQMAAYTCFANNGIAPVANATYLVEVQFAPMISVYRQMIYAEYQSS-------ATLECL 551
            ...|||.|...|.|.|.|.::........|.|.:.|.|:        |.:|:       |:|:|.
  Rat   201 ILGITREQSGKYECKAANEVSSADVKQVKVTVNYPPTIT--------ESKSNEATTGRQASLKCE 257

  Fly   552 VEAFPEAIRYWERAYDGKILDPSDKYGIESYPEGFKTTMRLTISNLRKDDFGYYHCVARNEL--- 613
            ..|.|.....|.|  |...::.::...|:| .||..:   ||::|:.::.:|.|.|||.|:|   
  Rat   258 ASAVPAPDFEWYR--DDTRINSANGLEIKS-TEGQSS---LTVTNVTEEHYGNYTCVAANKLGVT 316

  Fly   614 NATMVNFE-IAPQDPN 628
            ||::|.|: :.|..|:
  Rat   317 NASLVLFKRVLPTVPH 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6867NP_573262.2 Collagen 306..364 CDD:189968
IG_like 442..525 CDD:214653 24/82 (29%)
IGc2 449..511 CDD:197706 20/61 (33%)
IG_like 544..612 CDD:214653 21/74 (28%)
Ig 546..612 CDD:143165 20/65 (31%)
OLF 694..937 CDD:280371
LsampXP_038944182.1 Ig 55..145 CDD:416386
FR1 55..71 CDD:409353
Ig strand A' 56..62 CDD:409353
Ig strand B 64..72 CDD:409353
CDR1 72..76 CDD:409353
FR2 77..84 CDD:409353
Ig strand C 77..83 CDD:409353
CDR2 85..95 CDD:409353
Ig strand C' 87..90 CDD:409353
Ig strand C' 92..95 CDD:409353
FR3 96..131 CDD:409353
Ig strand D 100..107 CDD:409353
Ig strand E 110..116 CDD:409353
Ig strand F 123..131 CDD:409353
CDR3 132..136 CDD:409353
Ig strand G 136..145 CDD:409353
FR4 138..145 CDD:409353
Ig_3 148..218 CDD:404760 26/80 (33%)
Ig strand A' 155..160 CDD:409353 1/4 (25%)
Ig strand B 166..173 CDD:409353 2/6 (33%)
Ig strand C 179..184 CDD:409353 1/4 (25%)
Ig strand D 190..193 CDD:409353 0/2 (0%)
Ig strand E 197..203 CDD:409353 1/5 (20%)
Ig strand F 210..217 CDD:409353 2/6 (33%)
Ig strand G 224..232 CDD:409353 1/7 (14%)
Ig_3 235..311 CDD:404760 24/89 (27%)
Ig strand B 252..256 CDD:409353 2/3 (67%)
Ig strand C 265..269 CDD:409353 0/3 (0%)
Ig strand E 290..294 CDD:409353 1/6 (17%)
Ig strand F 304..309 CDD:409353 2/4 (50%)
Ig strand G 318..321 CDD:409353 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 57 1.000 Domainoid score I10613
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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