DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcna6a

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001124098.1 Gene:kcna6a / 795490 ZFINID:ZDB-GENE-080722-21 Length:475 Species:Danio rerio


Alignment Length:447 Identity:286/447 - (63%)
Similarity:347/447 - (77%) Gaps:32/447 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 DHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDRSRPSFDAILYYY 156
            |.:.||.|.||:|||||||||:||.::|:||||||.:|:|:|||||||:||||:|||||||||||
Zfish    26 DQECCELVTINISGLRFETQLKTLARYPNTLLGDPIKRMRFFDPLRNEFFFDRNRPSFDAILYYY 90

  Fly   157 QSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKFREDEGFIKEEERPLPDNEKQRKVWLLFEYPE 221
            |||||||||:|||:|:|.:||||||:||..|..|:||||.:||:|||||.||.:|::|||||:|:
Zfish    91 QSGGRLRRPINVPVDMFLDEIKFYEIGDDVIKHFQEDEGLLKEDERPLPSNEFKRQIWLLFEHPD 155

  Fly   222 SSQAARVVAIISVFVILLSIVIFCLETLPEFKH-YKVF------NTTTNGTKIEEDEVPDITDPF 279
            ||.|||::||:||.|||:||:|||:||||||:. .:||      |:||:..::..     .||||
Zfish   156 SSGAARIIAIVSVMVILISIIIFCIETLPEFREDDRVFDNHLPANSTTSVQRLSA-----YTDPF 215

  Fly   280 FLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAP 344
            ||:||:||:||.|||.:||||||:|..|.:|:||.|||:||:||||||:..:.|.:         
Zfish   216 FLLETICIVWFCFELFIRFLACPSKPTFFKDIMNTIDIVAIMPYFITLSLELGEVQ--------- 271

  Fly   345 VSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVL 409
                 .:..|..||||||||||||||||||||||||||||||:||:|||||||||||||.||::|
Zfish   272 -----SNQQQTTSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLIIGIIL 331

  Fly   410 FSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMRPVGVWGKIVGSLCAIAGVLTIALPV 474
            ||||||||||....:.|.||||.||||||:|||||||||.||.:.||||||:|||||||||||||
Zfish   332 FSSAVYFAEADDPETSFTSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSMCAIAGVLTIALPV 396

  Fly   475 PVIVSNFNYFYHRETDQEEMQSQNFNHVTSCPYLPGTLGQHM--KKSSL--SESSSD 527
            ||||||||||||||  ..|.....:.|||....||....::.  .||||  ||.|:|
Zfish   397 PVIVSNFNYFYHRE--HNEADQVEYTHVTCGRSLPMQCDRNKSDSKSSLMISEHSND 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 67/87 (77%)
BTB 99..182 CDD:197585 64/82 (78%)
Ion_trans 274..488 CDD:278921 150/213 (70%)
Ion_trans_2 403..479 CDD:285168 58/75 (77%)
kcna6aNP_001124098.1 BTB 33..122 CDD:197585 67/88 (76%)
BTB_2 33..121 CDD:280393 67/87 (77%)
Ion_trans 211..411 CDD:278921 152/215 (71%)
Ion_trans_2 <350..401 CDD:285168 43/50 (86%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 354 1.000 Domainoid score I952
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48093
OrthoDB 1 1.010 - - D307298at33208
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101149
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1110.830

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