DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and Kcnv1

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_080476.2 Gene:Kcnv1 / 67498 MGIID:1914748 Length:503 Species:Mus musculus


Alignment Length:484 Identity:153/484 - (31%)
Similarity:235/484 - (48%) Gaps:106/484 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 LQRNSLDGYGSLPKLSS----QDEEGGAGHGFGGGPQHFEPIPHDHDFCERVVINVSGLRFETQL 112
            |..:|||. |||..|.|    .:.||             ||:.....|    .:||.|.||....
Mouse    11 LDSSSLDS-GSLTSLDSSVFCSEGEG-------------EPLALGDCF----TVNVGGSRFVLSQ 57

  Fly   113 RTLNQFPDTLLGDPA------RRLRYF-------------DPLRNEYFFDRSRPSFDAILYYYQS 158
            :.|:.||.|.||..|      |||...             :|:.||||||||..:|..:|:||::
Mouse    58 QALSCFPHTRLGKLAVVVASYRRLGALAAAPSPLELCDDANPVDNEYFFDRSSQAFRYVLHYYRT 122

  Fly   159 GGRLRRPVNVPLDVFSEEIKFYELGDQAINKFREDEGFIKEE-------ERPLPDNEKQ------ 210
             |||.....:....|.:||:::.:.:.:|:....|..|.::|       ::...|.|.|      
Mouse   123 -GRLHVMEQLCALSFLQEIQYWGIDELSIDSCCRDRYFRRKELSETLDFKKDTDDQESQHESEQD 186

  Fly   211 ----------RKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGT 265
                      :|:|.:.|.|.||.|||:..:||:..:.:|||...|           .:...:..
Mouse   187 FSKGPCPTVRQKLWDILEKPGSSTAARIFGVISIIFVAVSIVNMAL-----------MSAELSWL 240

  Fly   266 KIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYFITLATV 330
            .::..|:         :|.:||.|||.|..:|||...::.:|.|.|.|:||::||:|::|||.. 
Mouse   241 NLQLLEI---------LEYVCISWFTGEFVLRFLCVKDRCHFLRKVPNIIDLLAILPFYITLLV- 295

  Fly   331 VAEEEDTLNLPKAPVSPQDKSSNQAMSL----AILRVIRLVRVFRIFKLSRHSKGLQILGRTLKA 391
                 ::|:           .|:....|    .:::|:||:|..|:.||.|||.||:.||.|:..
Mouse   296 -----ESLS-----------GSHTTQELENVGRLVQVLRLLRALRMLKLGRHSTGLRSLGMTITQ 344

  Fly   392 SMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMRPVGVWGK 456
            ...|:|||:.||.:|:.:||:..||||.....:.|.|:|..:|||..:||||||||:||....||
Mouse   345 CYEEVGLLLLFLSVGISIFSTIEYFAEQSIPDTTFTSVPCAWWWATTSMTTVGYGDIRPDTTTGK 409

  Fly   457 IVGSLCAIAGVLTIALPVPVIVSNFNYFY 485
            ||..:|.::|:|.:|||:.:|...|:..|
Mouse   410 IVAFMCILSGILVLALPIAIINDRFSACY 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 34/106 (32%)
BTB 99..182 CDD:197585 34/101 (34%)
Ion_trans 274..488 CDD:278921 82/216 (38%)
Ion_trans_2 403..479 CDD:285168 35/75 (47%)
Kcnv1NP_080476.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20 4/9 (44%)
BTB_POZ 44..163 CDD:365784 38/123 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 171..192 3/20 (15%)
Ion_trans 212..438 CDD:366146 90/262 (34%)
Selectivity filter. /evidence=ECO:0000250 395..400 4/4 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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