DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and Shawl

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster


Alignment Length:727 Identity:198/727 - (27%)
Similarity:302/727 - (41%) Gaps:224/727 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 RVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDRSRPSFDAILYYYQSGGRL 162
            |:::||||:|:||...||.:.|.|.|......|..:||:.|||||||....|..||.||:: |:|
  Fly     6 RIILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFTQILNYYRT-GKL 69

  Fly   163 RRPVNVPLDVFSEEIKFYELGDQAINK--------FREDEGFIK-------EEERPLPD------ 206
            ..|.:|...:|.||::|:.|....:..        .|:.:..:.       |.|:|..:      
  Fly    70 HYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTEEQIARLF 134

  Fly   207 -----------NEKQR---KVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFK---- 253
                       |..||   |:|.:|:.|.||..|::||.:|||.|.:|::.|||:|.|.|:    
  Fly   135 GFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTHPGFRVDLP 199

  Fly   254 --------------------------------H------------YKVFNTTT------------ 262
                                            |            ::|.|.|:            
  Fly   200 SGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSGNFTASGQA 264

  Fly   263 ------------------NGTKIEE------------------DEVPDITDPFFLIETLCIIWFT 291
                              ||:.:.|                  :......:.||.:|.:|.:||.
  Fly   265 TPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAFFYVELVCNVWFF 329

  Fly   292 FELTVRFLACPNKLNFCRDVMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAM 356
            .|:.:|.:..||...|.:..:|:||..|.:.::                       .|.......
  Fly   330 IEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFY-----------------------TDVMQRMGE 371

  Fly   357 SLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGS 421
            ...:|....:||:.|:|||:|||.||:||..|.|||.:||.||:|||.:|:|.|:|..|:||...
  Fly   372 YTGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQ 436

  Fly   422 DS--SFFKSIPDGFWWAVVTMTTVGYGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYF 484
            |:  :.|||||.|.|||:||||||||||:.|....|..||:|||:|||||||||||||||||:.|
  Fly   437 DNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMF 501

  Fly   485 YHRETDQEEMQSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMDLDDGVEST----------- 538
            |.....:.::..:...      .||  :.|..:|   .|.::......:.::.|           
  Fly   502 YSHTQARSKLPKKRRR------VLP--VEQPRRK---REPTAPHRGRTNAIKQTPPTGPGLVAGG 555

  Fly   539 --------PGLTETHPGRSAV-AP-----FLGAQ-------------QQQQQPVASSLSMSIDKQ 576
                    |||.....|.||. ||     |.||:             ....|...::::|::::.
  Fly   556 VVPVGAGGPGLGGHAVGHSAAGAPMFKDAFGGAKIGTVNVNGVNVIGLHPAQRTTTTMAMAMNEA 620

  Fly   577 LQHPLQQLTQTQLYQQQQQQQQQQQNGFKQQQQQTQQQLQQQQSHTINASAAAATSGSGSSGLTM 641
            ...|:..||. |:...|........:|.           ....:|.:..::||.||.:..:|   
  Fly   621 DPTPMSALTY-QVPMLQPTPTPAHSHGH-----------AHGHAHGLGPASAAMTSSASLTG--- 670

  Fly   642 RHNNALAVSIET 653
               :|.:.::.|
  Fly   671 ---SAASAAVAT 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 36/87 (41%)
BTB 99..182 CDD:197585 35/82 (43%)
Ion_trans 274..488 CDD:278921 94/215 (44%)
Ion_trans_2 403..479 CDD:285168 48/77 (62%)
ShawlNP_001097131.2 BTB 7..99 CDD:197585 36/92 (39%)
BTB_2 7..97 CDD:280393 36/90 (40%)
Ion_trans 307..506 CDD:278921 94/221 (43%)
Ion_trans_2 <449..499 CDD:285168 37/49 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439074
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
54.840

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