DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcnk3b

DIOPT Version :10

Sequence 1:NP_728123.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_700001.2 Gene:kcnk3b / 571330 ZFINID:ZDB-GENE-120709-43 Length:383 Species:Danio rerio


Alignment Length:135 Identity:34/135 - (25%)
Similarity:60/135 - (44%) Gaps:25/135 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 YF-ITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRV-IRLV-------RVFRIFKLSRH 378
            || ||:.|.:....      .||.:...|:.  .|..|:|.: :.||       |:....:...|
Zfish    85 YFAITVITTIGYGH------AAPSTDAGKAF--CMGYALLGIPLTLVMFQSLGERINTFVRFLLH 141

  Fly   379 SKGLQILG-RTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTT 442
             |..:.:| |..:.||..:.::.||..:..:...:|.:....|.  :||    .||::..:|:||
Zfish   142 -KAKKCMGLRRPEVSMANMVIIGFFSCVSTLCIGAAAFSHYEGW--TFF----HAFYYCFITLTT 199

  Fly   443 VGYGD 447
            :|:||
Zfish   200 IGFGD 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_728123.1 BTB_POZ 97..223 CDD:453885
Ion_trans 226..488 CDD:459842 34/135 (25%)
kcnk3bXP_700001.2 Ion_trans_2 <73..132 CDD:462301 13/54 (24%)
Ion_trans_2 167..243 CDD:462301 12/44 (27%)
Blue background indicates that the domain is not in the aligned region.

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