DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcnd2

DIOPT Version :10

Sequence 1:NP_728123.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001076336.1 Gene:kcnd2 / 570188 ZFINID:ZDB-GENE-041210-70 Length:630 Species:Danio rerio


Alignment Length:421 Identity:157/421 - (37%)
Similarity:241/421 - (57%) Gaps:60/421 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 VVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDRSRPSFDAILYYYQSGGRLR 163
            :::||||.||:|...||.::||||||...|.. :|....|||||||....|..||.:|:: |:|.
Zfish    42 IILNVSGTRFQTWRNTLERYPDTLLGSTERDF-FFHEETNEYFFDRDPDIFRHILNFYRT-GKLH 104

  Fly   164 RPVNVPLDVFSEEIKFYE-----LGDQAINKF----REDEGFIKEEER-------PLPDNEKQRK 212
            .|.:..:..:.||:.|:.     :||....::    ||:...|:::|.       .:||...:..
Zfish   105 YPRHECISAYDEELAFFGIIPEIIGDCCYEEYKDRRRENAERIQDDEENDNNNDLVMPDLSFRES 169

  Fly   213 VWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITD 277
            :|..||.|.:|..|.|...::.|.|.:|::...:||:|              ..|..:...:::.
Zfish   170 MWRAFENPHTSTMALVFYYVTGFFIAVSVMANVVETVP--------------CGISLNRAKELSC 220

  Fly   278 ------PFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYFITLATVVAEEED 336
                  .||.::|.|::.||.|..:|.:|.|::..|.:.||::||::||:||:|.|  |:.:.||
Zfish   221 GERYALAFFCLDTACVMIFTVEYLLRLIAAPSRYKFVKSVMSIIDVVAIMPYYIGL--VMTDNED 283

  Fly   337 TLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIF 401
                               :|.|.: .:|:.|||||||.||||.||:|||.|||:...|||.|:|
Zfish   284 -------------------VSGAFV-TLRVFRVFRIFKFSRHSAGLRILGYTLKSCASELGFLLF 328

  Fly   402 FLFIGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDMTPVGVWGKIVGSLCAIAG 466
            .|.:.:::|::.:::||.||..|.|.|||.|||:.:|||||:|||||.|..:.|||.||:|:::|
Zfish   329 SLTMAIIIFATVMFYAEKGSSASKFTSIPAAFWYTIVTMTTLGYGDMVPKTIMGKIFGSICSLSG 393

  Fly   467 VLTIALPVPVIVSNFNYFYHRETDQEEMQSQ 497
            ||.||||||||||||:..||:....|:.::|
Zfish   394 VLVIALPVPVIVSNFSRIYHQSQRAEKRRAQ 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_728123.1 BTB_POZ 97..223 CDD:453885 46/139 (33%)
Ion_trans 226..488 CDD:459842 108/267 (40%)
kcnd2NP_001076336.1 BTB_POZ 6..143 CDD:453885 37/102 (36%)
Ion_trans 183..416 CDD:459842 108/268 (40%)
DUF3399 471..547 CDD:463381
Blue background indicates that the domain is not in the aligned region.

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