DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcnq5b

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_697081.4 Gene:kcnq5b / 568646 ZFINID:ZDB-GENE-090312-178 Length:974 Species:Danio rerio


Alignment Length:440 Identity:87/440 - (19%)
Similarity:157/440 - (35%) Gaps:117/440 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 NEKQRKV----WLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKI 267
            |.:.|::    :.:.|.|.|     ...|...||.:|  |..||.       ..||:|       
Zfish    90 NARYRRIQNYLYNVLERPRS-----WAFIYHAFVFVL--VFGCLV-------LSVFST------- 133

  Fly   268 EEDEVPD----ITDPFFLIETLCIIWFTFELTV---------RFLACPNKLNFCRDVMNVIDIIA 319
                :||    .:....::|.:.|:.|..|..:         |:.....:|.|.|....|||||.
Zfish   134 ----IPDHQEMASQSLLILEFVMIVVFGLEYIIRIWSAGCCCRYRGWQGRLRFARKPFCVIDIIV 194

  Fly   320 IIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQI 384
            :|   .::|.|.|                 .|.:...:.:.||.:|.:::.|:.::.|.....::
Zfish   195 LI---ASVAVVSA-----------------GSQSNIFATSALRSLRFLQILRMVRMDRRGGTWKL 239

  Fly   385 LGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMR 449
            ||..:.|..:||....:..|:.::..|..||..|...:.. |.:..|..||..:|:||:||||..
Zfish   240 LGSVVYAHSKELVTAWYIGFLVLIFSSFLVYLVEKEFNKD-FATYADALWWGTITLTTIGYGDKT 303

  Fly   450 PVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQ----------------- 497
            |....|:::.:..|:.|:....||..::.|.|......:..|:..:.:                 
Zfish   304 PKTWTGRMLSAGFALLGISFFTLPAGILGSGFALKVQEQHRQKHFEKRRNPAACLIQCVWRSYAA 368

  Fly   498 NFNHVTSCPYLPGTLGQH----MKKSSLSESSSDMMDLDDGV-------------------ESTP 539
            :.|.|:...:.|.....|    .||.....::|..:...|.|                   ..:|
Zfish   369 DENSVSVATWKPHLKALHTCSPTKKDQGESATSQKLSFKDRVRMASPRGQSIKSRQTSVTDRRSP 433

  Fly   540 GLTETHPG--------------RSAVAPFLGAQQQQQQPVASSLSMSIDK 575
            |...:..|              |:...|.|..:.|.:.......::::|:
Zfish   434 GAEISTDGSSPAKVQKSWSFNDRTRFRPSLRLKSQSRSTPEGEANVTVDE 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393
BTB 99..182 CDD:197585
Ion_trans 274..488 CDD:278921 53/226 (23%)
Ion_trans_2 403..479 CDD:285168 22/75 (29%)
kcnq5bXP_697081.4 Ion_trans 145..343 CDD:278921 52/218 (24%)
Ion_trans_2 259..333 CDD:285168 22/74 (30%)
KCNQ_channel 443..625 CDD:281513 5/41 (12%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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