DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and kcng4b

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_009301775.1 Gene:kcng4b / 566228 ZFINID:ZDB-GENE-130530-634 Length:535 Species:Danio rerio


Alignment Length:444 Identity:149/444 - (33%)
Similarity:231/444 - (52%) Gaps:63/444 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 DHDFCERVVINVSGLRFETQLRTLNQFPDTLLG---------DPARRLRYFDPLRNEYFFDRSRP 147
            |.|..:..:|||.|.|:.....||::||.:.||         |.|:....:|..|.|:|||||..
Zfish    55 DVDHSKLALINVGGDRYTFPWSTLDEFPLSRLGQLRHCSSPDDIAQLCDDYDEARREFFFDRSSV 119

  Fly   148 SFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFY-----------------ELGDQAINKFREDEG 195
            :|..||.:. :.|:||....|.....|:|:.::                 .:.|.|..|.:|||.
Zfish   120 AFRVILNFL-AAGKLRLLRQVCAVSLSDELTYWGIDPVHMERCCRRKLLSRVEDVAEKKKKEDER 183

  Fly   196 FIKEE--ERPLPDNE----KQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKH 254
            ..|..  :|||..::    ...::..:.|.|.|..|.::.|..||.:|.::::..|:.|||:.::
Zfish   184 KQKRHALQRPLAQDKGFIRLMNRLQEIVENPHSGWAGKLFACFSVVMIAVTVISLCISTLPDHEN 248

  Fly   255 YKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIA 319
                          ..|..:.....|::||:|:.||:.|..:|||...:|:.|.|:.:||||:||
Zfish   249 --------------RGECTEKCRNIFIVETVCVAWFSMEFLLRFLQAESKMQFLRNPLNVIDVIA 299

  Fly   320 IIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLA-ILRVIRLVRVFRIFKLSRHSKGLQ 383
            |:||:|:|   |.:.|||.:  :|.::....|......|. ||||:|.:|:..:.:|:|||.|||
Zfish   300 ILPYYISL---VVDSEDTSD--EAELNGAGTSRGYLDKLGLILRVMRALRILYVMRLARHSLGLQ 359

  Fly   384 ILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAE--------AGSDSSFFKSIPDGFWWAVVTM 440
            .||.|::.||||.|||:.||.:.|.|||..|:.||        .|.:|  |.|||..:|||:::|
Zfish   360 TLGLTMQRSMREFGLLLLFLCVAVALFSPLVHLAEKEFSKGKATGPNS--FSSIPASYWWAIISM 422

  Fly   441 TTVGYGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEM 494
            ||||||||.|..:.|::|.....::|:|.:|.|...|...|:..||....::||
Zfish   423 TTVGYGDMVPYSIPGQVVAFSSILSGILIMAFPATSIFHVFSRSYHELKREQEM 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 31/113 (27%)
BTB 99..182 CDD:197585 30/108 (28%)
Ion_trans 274..488 CDD:278921 92/222 (41%)
Ion_trans_2 403..479 CDD:285168 34/83 (41%)
kcng4bXP_009301775.1 BTB_2 64..161 CDD:280393 30/97 (31%)
BTB <102..163 CDD:197585 17/61 (28%)
Ion_trans 259..471 CDD:278921 92/218 (42%)
Ion_trans_2 <414..465 CDD:285168 21/50 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

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