DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and kcnv1

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_688404.1 Gene:kcnv1 / 559915 ZFINID:ZDB-GENE-100922-109 Length:485 Species:Danio rerio


Alignment Length:478 Identity:145/478 - (30%)
Similarity:246/478 - (51%) Gaps:81/478 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 EP-IPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLR--------YFDPLRNEYFF 142
            || :|.| |..|..:|||.|.|:......|...|:|.||..|...|        ..|.|.|||||
Zfish    29 EPALPTD-DPLEFFIINVGGSRYILSQELLASHPETRLGKLALSSRDSALDLCDDADFLENEYFF 92

  Fly   143 DRSRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKFREDEGFIKEE------- 200
            ||:..:|..|:.:|:: |.|.....:.:..|.:||:::.:.:..|:....|:.:.::|       
Zfish    93 DRNSQTFQYIMNFYKT-GHLHVREELCVISFLQEIEYWGIDELRIDSCCRDKYYRRKEMKESLDI 156

  Fly   201 --ERPLPDNEKQ-----------RKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEF 252
              :..:.|.|::           :::|.:.|.|:||:||:....:|:|.:::|||...|.:|   
Zfish   157 RKDADVMDKEEEDFTGVLCQDLRQRLWDIMENPDSSKAAKTFGTLSMFFVVVSIVNMALISL--- 218

  Fly   253 KHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDI 317
             .:.|..            .|.|.|   ::|.:||||||.||.:|||...:|..|.|.|:|:||:
Zfish   219 -DFSVIG------------APIILD---ILEYICIIWFTGELVLRFLCVRDKCKFSRSVVNIIDL 267

  Fly   318 IAIIPYFITLA--TVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSK 380
            :||:|:::|||  ::..|..:..|:.:                 :::|:||:|..|:.||.|||.
Zfish   268 LAILPFYVTLAVESLHGESTELENVGR-----------------VVQVLRLMRSLRMLKLGRHST 315

  Fly   381 GLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGY 445
            ||:.||.|:.....|:|||:.||.:|:.:|::..|..|..:..:.|.::|..:|||..:||||||
Zfish   316 GLKSLGLTIAQCYEEVGLLMLFLSVGISIFATLEYAIEHDTPETTFTNVPSAWWWATTSMTTVGY 380

  Fly   446 GDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQNFNHVTSCPYLPG 510
            ||:||....||::..:|.::|:|.:|||:.:|...|:..|.    ..:|:.....|        |
Zfish   381 GDIRPDTAVGKVMAFICILSGILILALPIAIINDRFSACYF----TLKMKEAALRH--------G 433

  Fly   511 TLGQHMKKSSLSESSSDMMDLDD 533
            .:.:.:.:||.|:.|:..::|.|
Zfish   434 EVLKRLTRSSASDMSAIGVNLRD 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 29/95 (31%)
BTB 99..182 CDD:197585 29/90 (32%)
Ion_trans 274..488 CDD:278921 80/215 (37%)
Ion_trans_2 403..479 CDD:285168 29/75 (39%)
kcnv1XP_688404.1 BTB 42..141 CDD:197585 30/99 (30%)
BTB_2 42..139 CDD:280393 30/97 (31%)
Ion_trans 226..420 CDD:278921 80/213 (38%)
Ion_trans_2 337..417 CDD:285168 30/79 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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