DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and kcnc3a

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_009297818.1 Gene:kcnc3a / 559096 ZFINID:ZDB-GENE-100901-1 Length:666 Species:Danio rerio


Alignment Length:473 Identity:176/473 - (37%)
Similarity:254/473 - (53%) Gaps:80/473 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 ERVVINVSGLRFETQLRTLNQFPDTLLG---DPARRLRY-FDPLRNEYFFDRSRPSFDAILYYYQ 157
            |::|||..|:|.||...||...|.|.|.   :|.....: :||..:|:||||...:|..||.||:
Zfish    36 EKIVINCGGIRHETYRSTLKTLPGTRLSWLTEPDAFSNFDYDPKSDEFFFDRHPNTFAFILNYYR 100

  Fly   158 SGGRLRRPVNVPLDVFSEEIKFYELGDQAI--------NKFREDEGFIKEEERPLPDNEK----- 209
            : |:|..|.:|...:|.||:.|:.:.:..:        .:.|:.|..:...|.|.||..:     
Zfish   101 T-GKLHCPSDVCGPLFEEELAFWGIDETDVEACCWMNYRQHRDAEEALDSFETPEPDPPEDDPAL 164

  Fly   210 --------------------------QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLET 248
                                      |..||.|||.|.||:.||.||..|:..||:||..|||||
Zfish   165 TGGADGDLKRLCLQEDGRNPSRWSTWQPWVWALFEDPYSSKYARYVAFGSLLFILISISTFCLET 229

  Fly   249 LPEFKHYKVFNTTTNGT--KIEEDEV--PDITDPFF-LIETLCIIWFTFELTVRFLACPNKLNFC 308
            ...|.  .::|.|.|.|  .:..:||  ..:||.:. .:|.:|::|||.|:..|.:.||:|..|.
Zfish   230 HEAFN--TIYNKTENVTVGNVTREEVVFEVVTDNWLTYVEGVCVVWFTIEVFTRVIFCPDKAEFF 292

  Fly   309 RDVMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMS-LAILRVIRLVRVFRI 372
            :..:|:||.:||:|:::.:|.                  ...||..|.. |..|||:|.||:.||
Zfish   293 KSSLNIIDFVAILPFYLEMAL------------------SGLSSKAAKDVLGFLRVVRFVRILRI 339

  Fly   373 FKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAE-AGSD--------SSFFKS 428
            |||:||..||::||.||:||..|..|||.||.:||::|::.:|:|| .|:|        .:.||:
Zfish   340 FKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGADPDDPTASAHTAFKN 404

  Fly   429 IPDGFWWAVVTMTTVGYGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEE 493
            ||.|||||||||||:|||||.|....|.:||:|||:|||||||:||||||:||..:|.....:::
Zfish   405 IPIGFWWAVVTMTTLGYGDMYPETWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQK 469

  Fly   494 MQSQNFNHVTSCPYLPGT 511
            :..:...|:...|. ||:
Zfish   470 LPKKKNKHIPRAPQ-PGS 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 33/91 (36%)
BTB 99..182 CDD:197585 33/86 (38%)
Ion_trans 274..488 CDD:278921 102/224 (46%)
Ion_trans_2 403..479 CDD:285168 48/84 (57%)
kcnc3aXP_009297818.1 Potassium_chann 1..29 CDD:314363
BTB_2 38..132 CDD:308049 33/94 (35%)
Ion_trans 207..465 CDD:306908 123/277 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

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