DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcns3b

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001032460.1 Gene:kcns3b / 558674 ZFINID:ZDB-GENE-051120-78 Length:424 Species:Danio rerio


Alignment Length:428 Identity:137/428 - (32%)
Similarity:227/428 - (53%) Gaps:69/428 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 VVINVSGLRFETQLRTLNQFPDTLLG------DPARRLRYFD---PLRNEYFFDRSRPSFDAILY 154
            |.:|:.|:..:.:...|.:||.|.:.      ..|..|...|   |...||:||||...|..:|.
Zfish    17 VNLNIGGIHHKVERCVLLRFPHTRVAQLIQCHSDAAILELCDDYSPTEQEYYFDRSPQVFHCVLN 81

  Fly   155 YYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKF-------REDE---------------GFI 197
            :|:: |.......:.:..||:||:::.|.:..::..       |:||               |.|
Zfish    82 FYRT-GHFHTLEELCVFCFSQEIEYWGLCELDLDACCLEWFLERKDEHELNSSGQSSKNASSGEI 145

  Fly   198 KEEERPLPDNEKQR------KVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYK 256
            ......|..:|..|      .:|...|.|:.|:.:|.||.:||.|||:||:..|:.:||||::  
Zfish   146 SVTSEDLWKSEGMRCSDVRKLMWETLEDPQHSRCSRGVAAVSVLVILISILAMCVHSLPEFRY-- 208

  Fly   257 VFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAII 321
                .|:|    |..|.|      .:|..||::|:.|..:|.:|.|..|.|..:.:|:||:.:|:
Zfish   209 ----QTDG----EHSVLD------SVELFCIVFFSVEFFLRVIAAPQPLRFLGNPLNMIDVASIL 259

  Fly   322 PYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAM--SLAILRVIRLVRVFRIFKLSRHSKGLQI 384
            |::||||....:||             ||..||::  ...:::|:||:|.||:.||:|||:|::.
Zfish   260 PFYITLAVERLDEE-------------DKEENQSLVNMGRVVQVLRLMRSFRVLKLARHSEGMRA 311

  Fly   385 LGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMR 449
            .|.||.....|:|||:.|:.:|:..||:.:|:.|....||...|||..:||.:::||||||||:.
Zfish   312 FGETLMNCQCEVGLLVLFITVGISFFSTFIYYTEKEEASSQLSSIPICWWWGIISMTTVGYGDVY 376

  Fly   450 PVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 487
            |:.|.|:||.::|.:.|:|.|:||:.:|::||:.::.:
Zfish   377 PLTVAGRIVATVCILCGLLVISLPITIIMNNFSKYFEK 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 26/96 (27%)
BTB 99..182 CDD:197585 25/91 (27%)
Ion_trans 274..488 CDD:278921 80/216 (37%)
Ion_trans_2 403..479 CDD:285168 32/75 (43%)
kcns3bNP_001032460.1 BTB 17..117 CDD:197585 26/100 (26%)
BTB_2 17..116 CDD:280393 26/99 (26%)
Ion_trans 205..414 CDD:278921 86/237 (36%)
Ion_trans_2 329..410 CDD:285168 35/80 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.810

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