DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and kcnb2a

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_005163503.1 Gene:kcnb2a / 555921 ZFINID:ZDB-GENE-070912-170 Length:824 Species:Danio rerio


Alignment Length:584 Identity:191/584 - (32%)
Similarity:293/584 - (50%) Gaps:112/584 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 RVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLR----------NEYFFDRSRPSFDAI 152
            ||.|||.||..|...|||::.|.|.|| ..|.....:.|.          |||||||...:|.:|
Zfish    35 RVRINVGGLVHEVLWRTLDRLPRTRLG-KLRDCNTHETLMEICDDYSLNDNEYFFDRHPGAFSSI 98

  Fly   153 LYYYQSGGRLRRPVNVPLDVFSEEI----------------KFYELGDQAINKFREDEGFIKEEE 201
            |.:|:: |:|.....:....|.:|:                ::::..:|...:.|.:...::|:|
Zfish    99 LNFYRT-GKLHMMEEMCALSFGQELDYWGIDEIYLESCCQARYHQKKEQMNEELRREAETLREKE 162

  Fly   202 RPLPDN----EKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTT 262
            ....|.    :|::|:|.|.|.|.||.||:|:||||:..|:||.:...|.||||.:....|.   
Zfish   163 GDQVDTGCCPDKRQKLWDLLEKPSSSVAAKVLAIISILFIILSTIALSLNTLPELQVIDEFG--- 224

  Fly   263 NGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYFITL 327
                 :.::.|::..    :|.:||.|||.|..:|||:.|||..|.:..:||||::||:||::|:
Zfish   225 -----QSNDNPNLAH----VEAVCIAWFTMEYLLRFLSSPNKWKFFKGPLNVIDLLAILPYYVTI 280

  Fly   328 ATVVAEEEDTLNLPKAPVSPQDKSSNQAMSL-AILRVIRLVRVFRIFKLSRHSKGLQILGRTLKA 391
            .                ::..:||..|..:: .::::.|::|:.||.||:|||.|||.||.||:.
Zfish   281 F----------------LTESNKSVLQFQNVRRVVQIFRIMRILRILKLARHSTGLQSLGFTLRR 329

  Fly   392 SMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMRPVGVWGK 456
            |..||||||.||.:|:::|||.|:|||...|::.|.|||..||||.:|||||||||:.|..:.||
Zfish   330 SYNELGLLILFLAMGIMIFSSLVFFAEKDEDATKFTSIPASFWWATITMTTVGYGDIYPQTLLGK 394

  Fly   457 IVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQE---------EMQSQNFNHVTSCPYLPGTL 512
            |||.||.|||||.||||:|:||:||:.||..:..||         |...:|.:.|:         
Zfish   395 IVGGLCCIAGVLVIALPIPIIVNNFSEFYKEQKRQEKAIKRREALERAKRNGSIVS--------- 450

  Fly   513 GQHMKKSSLSESSSDMMDLDDGV--ESTPGLTETH--PGRSAVAPFLGAQQQQQQPVASSLSMSI 573
                  .:|.::.:..|:|.|.|  ::.....:.|  |.|         ...|:.|.:...|...
Zfish   451 ------MNLKDAFARNMELLDVVIEKNEDKAADNHLSPSR---------WNYQKNPNSELGSKGF 500

  Fly   574 DKQLQHPLQQLTQTQLYQQQQQQQQQQQNGFKQQQQQTQQQLQQQQSHTINASAAAATSGSGSS 637
            |.:.|...|..:..::::.....|:......:|...|              .:||::.|.||.|
Zfish   501 DSKYQEVGQLASPERVFRSTPSPQRLNAKSLEQMYNQ--------------MTAASSMSSSGPS 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 32/113 (28%)
BTB 99..182 CDD:197585 31/108 (29%)
Ion_trans 274..488 CDD:278921 101/214 (47%)
Ion_trans_2 403..479 CDD:285168 46/75 (61%)
kcnb2aXP_005163503.1 BTB 36..142 CDD:197585 31/107 (29%)
BTB_2 36..135 CDD:280393 31/100 (31%)
Ion_trans 229..427 CDD:278921 102/217 (47%)
Ion_trans_2 340..421 CDD:285168 50/80 (63%)
Kv2channel 473..695 CDD:281514 18/101 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

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