DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and kcna5

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_004912856.2 Gene:kcna5 / 496997 XenbaseID:XB-GENE-6037401 Length:616 Species:Xenopus tropicalis


Alignment Length:597 Identity:325/597 - (54%)
Similarity:388/597 - (64%) Gaps:125/597 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 GLGEDRQHRKKQQQQQQHQKEQLEQKEEQKKIAERKLQLREQQLQRNSLDGYGSLPKLSSQDEEG 73
            |..|:......||||||:|.                             .|.|          :.
 Frog    54 GRQEEGSGESCQQQQQQYQP-----------------------------PGTG----------QA 79

  Fly    74 GAGHGFGGGPQHFEPI---------------------------PH-------------------- 91
            |.|...|||..|..|.                           ||                    
 Frog    80 GGGGCRGGGVGHHLPSNDMIMSHPGSTIKECDIETVIRLEEEEPHAQQHSHHHPEEEEDHQFDLG 144

  Fly    92 --DHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDRSRPSFDAILY 154
              ||:..:||:||::||||||||.|||||||||||||.:|:|:||||||||||||:|||||.|||
 Frog   145 IMDHESNQRVIINIAGLRFETQLSTLNQFPDTLLGDPEKRMRFFDPLRNEYFFDRNRPSFDGILY 209

  Fly   155 YYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKFREDEGFIKEEERPLPDNEKQRKVWLLFEY 219
            :|||||::||||||.:|||::||:|||||::|:.:|||||||||:||:|||.||.||:|||:|||
 Frog   210 FYQSGGKIRRPVNVSIDVFADEIRFYELGEEAMERFREDEGFIKDEEKPLPCNEFQRQVWLIFEY 274

  Fly   220 PESSQAARVVAIISVFVILLSIVIFCLETLPEFKH--------YKVFNTTTNGTKIEEDEVP--D 274
            ||||.:||.:||:||.|||:||:.|||||||||:.        .||.|.|      :|...|  .
 Frog   275 PESSSSARGIAIVSVLVILISIITFCLETLPEFRDENELPPALSKVLNDT------QEHPSPPSG 333

  Fly   275 ITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYFITLATVVAEEEDTLN 339
            :|||||:|||.|:|||||||.|||.|||:|.:|.:::||:|||:|||||||||.|.:|:.     
 Frog   334 LTDPFFIIETTCVIWFTFELLVRFFACPSKSDFSKNIMNIIDIVAIIPYFITLGTELAQH----- 393

  Fly   340 LPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLF 404
                    |..:..|||||||||||||||||||||||||||||||||:|||||||||||||||||
 Frog   394 --------QTNNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLF 450

  Fly   405 IGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMRPVGVWGKIVGSLCAIAGVLT 469
            |||:|||||||||||....|.|.||||.|||||||||||||||||||.|.|||||||||||||||
 Frog   451 IGVILFSSAVYFAEADDPESHFSSIPDAFWWAVVTMTTVGYGDMRPVTVGGKIVGSLCAIAGVLT 515

  Fly   470 IALPVPVIVSNFNYFYHRETDQEE---MQSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMDL 531
            |||||||||||||||||||||.||   ::.::.:...||   .|.|.:...::|||:|..  ::.
 Frog   516 IALPVPVIVSNFNYFYHRETDHEEQVMLKEESSSRQGSC---AGDLKRSPSRASLSKSVH--LEN 575

  Fly   532 DDGVESTPGLTE 543
            .:|:.:..|..|
 Frog   576 IEGINNGTGSLE 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 67/87 (77%)
BTB 99..182 CDD:197585 64/82 (78%)
Ion_trans 274..488 CDD:278921 163/213 (77%)
Ion_trans_2 403..479 CDD:285168 65/75 (87%)
kcna5XP_004912856.2 BTB_POZ 152..278 CDD:365784 95/125 (76%)
Ion_trans 281..534 CDD:395416 189/271 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 361 1.000 Domainoid score I949
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 624 1.000 Inparanoid score I853
OMA 1 1.010 - - QHG48093
OrthoDB 1 1.010 - - D307298at33208
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 1 1.000 - - otm49432
Panther 1 1.100 - - LDO PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.080

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