DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcnk1

DIOPT Version :10

Sequence 1:NP_728123.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001011490.1 Gene:kcnk1 / 496985 XenbaseID:XB-GENE-5846322 Length:330 Species:Xenopus tropicalis


Alignment Length:158 Identity:30/158 - (18%)
Similarity:50/158 - (31%) Gaps:71/158 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   396 LGLLIFFLFIGVVLFSSAV-----------------YFAE------------------------- 418
            ||.|: ||.||..:||:..                 |..|                         
 Frog    28 LGYLL-FLLIGAAIFSAVELPHEHVLREELLDLKHRYLQENECLSEERLESFLSRVLEASNYGVS 91

  Fly   419 -----AGSENSFFKSIPDAFWWAVVTMTTVGYGDMTPVGVWGKIVGSLCAIAGVLTIALPV---- 474
                 :|:.|..|.|   |.::....::|.|||...|:...||   :.|.|..::.|.|.:    
 Frog    92 MLNNVSGNPNWDFTS---ALFFVSTVLSTTGYGHTVPLSNAGK---TFCIIYSIIGIPLTLLLFT 150

  Fly   475 -------------PVIVSNFNYFYHRET 489
                         |:...:..:.|:::|
 Frog   151 ALVQRIMVHVTHRPISYFHLRWGYNKQT 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_728123.1 BTB_POZ 97..223 CDD:453885
Ion_trans 226..488 CDD:459842 29/155 (19%)
kcnk1NP_001011490.1 Ion_trans_2 96..157 CDD:462301 16/66 (24%)
Ion_trans_2 192..267 CDD:462301
Blue background indicates that the domain is not in the aligned region.

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