DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and Shab

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster


Alignment Length:915 Identity:241/915 - (26%)
Similarity:363/915 - (39%) Gaps:327/915 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 EDRQHRKKQQQQQQHQKEQLEQKEEQKKIAERKLQLREQQL----------------------QR 54
            :.:||.|:||||||.|::||:.|:.|::..:...|...:.:                      ..
  Fly    52 QQQQHSKQQQQQQQQQQQQLQLKQHQQQQQDILYQQHNEAIAIARGLQAATPADIGDNQPYYDTS 116

  Fly    55 NSLD----------------GYGSLP-------KLSSQDEEG----------------------- 73
            .::|                |.||||       .|...:..|                       
  Fly   117 GNVDWERAMGAGGAGAYGGIGIGSLPAAGGAAYHLGPANPAGLVSRHLDYGDGGHLAGPSAGLPA 181

  Fly    74 ------------------------------GAGHGFGGG---------------PQHFEP----- 88
                                          |||.|.|.|               |.|..|     
  Fly   182 GAVGSGAGAGAGAGASVTGSGSGAGTGTGTGAGSGSGSGAAGKEVRYAPFPVASPTHSIPTTSQQ 246

  Fly    89 --------------------------------------------IPHDHDFC--------ERVVI 101
                                                        ||....|.        .||.|
  Fly   247 IVGSVGGVGVGGASSQSISGGVPTHSQSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSI 311

  Fly   102 NVSGLRFETQLRTLNQFPDTLLGDPARRLRY-------------FDPLRNEYFFDRSRPSFDAIL 153
            ||.|:|.|...|||.:.|.|.||    |||.             :....|||||||...||.:||
  Fly   312 NVGGVRHEVLWRTLERLPHTRLG----RLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL 372

  Fly   154 YYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAI-----NKFREDEGFIKEEERPLPDN------ 207
            .:|:: |:|.....:.:..||::::::.:.:..:     :|:.:.:..:.||.|...::      
  Fly   373 NFYRT-GKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLRQRDE 436

  Fly   208 ---------EKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTN 263
                     |.|:.:|.|.|.|.:|.||||:|:||:..|:||.:...|.|||:.:|      ..|
  Fly   437 EEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQH------IDN 495

  Fly   264 GTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYFITLA 328
            ||       |.......::|.:||.|||.|..:||.|.|:|..|.:..:|:||::||:|||::|.
  Fly   496 GT-------PQDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLF 553

  Fly   329 TVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASM 393
            .:...:..|...       ||..       .:::|.|::|:.||.||:|||.|||.||.||:.|.
  Fly   554 LLETNKNATDQF-------QDVR-------RVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSY 604

  Fly   394 RELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMRPVGVWGKIV 458
            :|||||:.||.:||::|||..||||.....:.|.|||:.||||.:|||||||||:.|....||::
  Fly   605 KELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVI 669

  Fly   459 GSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQ--------------NFNHVTSCPYLP 509
            |::|.|.|||.||||:|:||:||..||..:..:|:...:              :|:|:       
  Fly   670 GTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIVSFHHI------- 727

  Fly   510 GTLGQHMKKSSLSESSSDMMDLDDGVESTPGLTE-THP-GRSAVAPFLGAQ--QQQQQP------ 564
                      :|.::.:..|||.|.:..|...|. .|| |:....|.:|.|  ..|..|      
  Fly   728 ----------NLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQSTPNIGRQTLDVQSAPGHNLSQ 782

  Fly   565 -----------------------------VASSLSMSIDKQLQHPLQQ------------LTQTQ 588
                                         ||:..:.::..:.....:|            ..||.
  Fly   783 TDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLHNRRGSSSEQDAVPPYSFDNPNARQTS 847

  Fly   589 L-----YQQQQQQQQQQQNGFKQQQQQTQQQLQQQQSHTINASAAAATSGSGSSGLTMRHNNALA 648
            :     |:::||...|||    |||||...|:||.|....|.: ..||.|..::.|.|...::.|
  Fly   848 MMAMESYRREQQALLQQQ----QQQQQQMLQMQQIQQKAPNGN-GGATGGGVANNLAMVAASSAA 907

  Fly   649 VSIET 653
            .::.|
  Fly   908 TAVAT 912

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 33/100 (33%)
BTB 99..182 CDD:197585 33/95 (35%)
Ion_trans 274..488 CDD:278921 96/213 (45%)
Ion_trans_2 403..479 CDD:285168 42/75 (56%)
ShabNP_001189037.1 BTB 309..416 CDD:197585 34/111 (31%)
BTB_2 309..408 CDD:280393 33/103 (32%)
Ion_trans 501..700 CDD:278921 96/212 (45%)
Ion_trans_2 613..696 CDD:285168 46/82 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
43.910

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