DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and KCNS2

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_065748.1 Gene:KCNS2 / 3788 HGNCID:6301 Length:477 Species:Homo sapiens


Alignment Length:514 Identity:154/514 - (29%)
Similarity:251/514 - (48%) Gaps:137/514 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 INVSGLRFETQLRTLNQFPDTLLGDPARRLRY-------------FDPLRNEYFFDRSRPSFDAI 152
            |||.|.:...:..||.:||:|.||    ||..             :|.::.|::|||:...|..:
Human    21 INVGGFKRRLRSHTLLRFPETRLG----RLLLCHSREAILELCDDYDDVQREFYFDRNPELFPYV 81

  Fly   153 LYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKFREDE--GFIKEEERPLPDNEK------ 209
            |::|.: |:|.....:.:..||:||:::     .||:|..|.  .:.....:..|:.||      
Human    82 LHFYHT-GKLHVMAELCVFSFSQEIEYW-----GINEFFIDSCCSYSYHGRKVEPEQEKWDEQSD 140

  Fly   210 -----------------------------QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFC 245
                                         :|::||..:.|..|..:||.:|:|:.|::.||:..|
Human   141 QESTTSSFDEILAFYNDASKFDGQPLGNFRRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMC 205

  Fly   246 LETLPEFKHYKVFNTTTNGTKIEEDEVPDI-----TDP-FFLIETLCIIWFTFELTVRFLACPNK 304
            |.:||:|                  ::||.     .|| |.::|...|.||||||..||...|:.
Human   206 LNSLPDF------------------QIPDSQGNPGEDPRFEIVEHFGIAWFTFELVARFAVAPDF 252

  Fly   305 LNFCRDVMNVIDIIAIIPYFITL-ATVVAEEEDTL-NLPKAPVSPQDKSSNQAMSLAILRVIRLV 367
            |.|.::.:|:||:::|:|::||| ..:|.|...|| ||.:                 :.:|:||:
Human   253 LKFFKNALNLIDLMSIVPFYITLVVNLVVESTPTLANLGR-----------------VAQVLRLM 300

  Fly   368 RVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDG 432
            |:|||.||:|||.||:.||.|||.|.:|:|||:.:|.:|:.:||...|..|. .::....:||..
Human   301 RIFRILKLARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAYTIEK-EENEGLATIPAC 364

  Fly   433 FWWAVVTMTTVGYGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQ 497
            :|||.|:||||||||:.|....||:..|.|.:||:|.:.||:.:|.:.|::||.|   |::::|.
Human   365 WWWATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITLIFNKFSHFYRR---QKQLESA 426

  Fly   498 NFNHVTSCPYLPGTLGQHMKK---------------------SSLSESSSDMMDLDDGV 535
                :.||.:     |..||:                     :::|.||...:.|:|.:
Human   427 ----MRSCDF-----GDGMKEVPSVNLRDYYAHKVKSLMASLTNMSRSSPSELSLNDSL 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 27/98 (28%)
BTB 99..182 CDD:197585 27/93 (29%)
Ion_trans 274..488 CDD:278921 89/221 (40%)
Ion_trans_2 403..479 CDD:285168 31/75 (41%)
KCNS2NP_065748.1 BTB_2 19..118 CDD:308049 31/106 (29%)
Ion_trans 186..421 CDD:306908 103/273 (38%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 374..379 4/4 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.810

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