DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and KCNC2

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_631875.1 Gene:KCNC2 / 3747 HGNCID:6234 Length:638 Species:Homo sapiens


Alignment Length:576 Identity:193/576 - (33%)
Similarity:271/576 - (47%) Gaps:160/576 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 ERVVINVSGLRFETQLRTLNQFPDTLL----------------GD-----------PARRLRYFD 134
            |||::||.|.|.||...||...|.|.|                ||           |.|.    .
Human     8 ERVILNVGGTRHETYRSTLKTLPGTRLALLASSEPPGDCLTTAGDKLQPSPPPLSPPPRA----P 68

  Fly   135 PLR----------------------------NEYFFDRSRPSFDAILYYYQSGGRLRRPVNVPLD 171
            ||.                            .|:||||....|..:|.||:: |:|..|.:|...
Human    69 PLSPGPGGCFEGGAGNCSSRGGRASDHPGGGREFFFDRHPGVFAYVLNYYRT-GKLHCPADVCGP 132

  Fly   172 VFSEEIKFYEL------------------GDQAINKFR----------EDEGFIK-----EEERP 203
            :|.||:.|:.:                  .::|::.|.          :||....     |:...
Human   133 LFEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDIFETPDLIGGDPGDDEDLAAKRLGIEDAAG 197

  Fly   204 L--PDNEK------QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNT 260
            |  ||.:.      |.::|.|||.|.||:|||.:|..|:|.||:||..|||||...|...|  |.
Human   198 LGGPDGKSGRWRRLQPRMWALFEDPYSSRAARFIAFASLFFILVSITTFCLETHEAFNIVK--NK 260

  Fly   261 T---TNGTKIE-EDEVPDITDP-FFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAI 320
            |   .|||.:. :.|:.  ||| ...:|.:|::|||||..||.:..||||.|.::::|:||.:||
Human   261 TEPVINGTSVVLQYEIE--TDPALTYVEGVCVVWFTFEFLVRIVFSPNKLEFIKNLLNIIDFVAI 323

  Fly   321 IPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMS-LAILRVIRLVRVFRIFKLSRHSKGLQI 384
            :|:::                  .|.....||..|.. |..|||:|.||:.|||||:||..||::
Human   324 LPFYL------------------EVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRV 370

  Fly   385 LGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAE---------AGSDSSFFKSIPDGFWWAVVTM 440
            ||.||:||..|..|||.||.:||::|::.:|:||         :.|:.:.||:||.|||||||||
Human   371 LGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGFWWAVVTM 435

  Fly   441 TTVGYGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQNFNHVTSC 505
            ||:|||||.|....|.:||:|||:|||||||:||||||:||..:|.....::::..:...|:...
Human   436 TTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPRKRKKHIPPA 500

  Fly   506 PYLPG-------------------TLGQHMKKSSLSESSSDMMDLDDGVESTPGLT 542
            |....                   .||   |.:.|.|.:..::..||...|.|.|:
Human   501 PQASSPTFCKTELNMACNSTQSDTCLG---KDNRLLEHNRSVLSGDDSTGSEPPLS 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 35/160 (22%)
BTB 99..182 CDD:197585 35/137 (26%)
Ion_trans 274..488 CDD:278921 105/224 (47%)
Ion_trans_2 403..479 CDD:285168 47/84 (56%)
KCNC2NP_631875.1 BTB_KCNC2_4 7..166 CDD:349722 37/162 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 38..93 6/58 (10%)
Ion_trans 228..484 CDD:395416 127/277 (46%)
Selectivity filter. /evidence=ECO:0000250 437..442 3/4 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 538..572 5/16 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.810

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