DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and KCNA6

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_002226.1 Gene:KCNA6 / 3742 HGNCID:6225 Length:529 Species:Homo sapiens


Alignment Length:534 Identity:315/534 - (58%)
Similarity:370/534 - (69%) Gaps:92/534 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 PKLSSQD-----EEGGAGHGFGGGPQHFEPIPHDHDFC---ERVVINVSGLRFETQLRTLNQFPD 120
            |:...||     |.||     |||             |   ||:|||:||||||||||||:.|||
Human    18 PEGEQQDAGDFPEAGG-----GGG-------------CCSSERLVINISGLRFETQLRTLSLFPD 64

  Fly   121 TLLGDPARRLRYFDPLRNEYFFDRSRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQ 185
            ||||||.||:|:||||||||||||:||||||||||||||||||||||||||:|.|||:||:|||:
Human    65 TLLGDPGRRVRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFLEEIRFYQLGDE 129

  Fly   186 AINKFREDEGFIK---EEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLE 247
            |:..||||||.:.   |:|:|||....||:|||||||||||..||.:||:||.|||:||||||||
Human   130 ALAAFREDEGCLPEGGEDEKPLPSQPFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLE 194

  Fly   248 TLPEFK---------HYKVFNTTTNGTKIEEDEVPD----------------------------I 275
            |||:|:         .....:..:.|::.||::..|                            .
Human   195 TLPQFRVDGRGGNNGGVSRVSPVSRGSQEEEEDEDDSYTFHHGITPGEMGTGGSSSLSTLGGSFF 259

  Fly   276 TDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYFITLATVVAEEEDTLNL 340
            ||||||:|||||:||||||.|||.|||:|..|.|::||:||::||.||||||.|.:.::::    
Human   260 TDPFFLVETLCIVWFTFELLVRFSACPSKPAFFRNIMNIIDLVAIFPYFITLGTELVQQQE---- 320

  Fly   341 PKAPVS-PQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLF 404
             :.|.| ...::..|||||||||||||||||||||||||||||||||:||:||||||||||||||
Human   321 -QQPASGGGGQNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGKTLQASMRELGLLIFFLF 384

  Fly   405 IGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMRPVGVWGKIVGSLCAIAGVLT 469
            |||:|||||||||||..|.|.|.||||.||||||||||||||||.|:.|.|||||||||||||||
Human   385 IGVILFSSAVYFAEADDDDSLFPSIPDAFWWAVVTMTTVGYGDMYPMTVGGKIVGSLCAIAGVLT 449

  Fly   470 IALPVPVIVSNFNYFYHRETDQEEMQSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMDLDDG 534
            ||||||||||||||||||||:||| |.| :.||| |                .:.:.|:...|:|
Human   450 IALPVPVIVSNFNYFYHRETEQEE-QGQ-YTHVT-C----------------GQPAPDLRATDNG 495

  Fly   535 VESTPGLTETHPGR 548
            : ..|...|.:..|
Human   496 L-GKPDFPEANRER 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 74/87 (85%)
BTB 99..182 CDD:197585 71/82 (87%)
Ion_trans 274..488 CDD:278921 162/242 (67%)
Ion_trans_2 403..479 CDD:285168 64/75 (85%)
KCNA6NP_002226.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..33 4/14 (29%)
BTB_POZ_KCNA6 41..170 CDD:349714 99/128 (77%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 210..233 4/22 (18%)
Ion_trans 258..468 CDD:366146 161/214 (75%)
S4-S5 linker. /evidence=ECO:0000250|UniProtKB:P63142 360..373 10/12 (83%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 422..427 4/4 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 488..513 6/22 (27%)
PDZ-binding. /evidence=ECO:0000255 527..529
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 362 1.000 Domainoid score I953
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48093
OrthoDB 1 1.010 - - D307298at33208
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101149
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
109.830

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