DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and Kcng4

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001100905.1 Gene:Kcng4 / 307900 RGDID:1308553 Length:506 Species:Rattus norvegicus


Alignment Length:489 Identity:151/489 - (30%)
Similarity:238/489 - (48%) Gaps:88/489 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 ERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRY-------------FDPLRNEYFFDRSRPS 148
            :.:::||.|.|:.....||:.||.:.|.    |||.             :|....|:||||:..:
  Rat    58 KEILVNVGGQRYLLPWSTLDAFPLSRLS----RLRLCRSYEEITQLCDDYDENSQEFFFDRNPSA 118

  Fly   149 FDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINK---------------FREDEGFIK 198
            |..|:.:..:|..:.......|. |.||:.::.:.:..:.:               .|.:|...:
  Rat   119 FGVIVSFLAAGKLVLLREMCALS-FREELSYWGIEEANLERCCLRKLLKKLEEAAELRREEAAQR 182

  Fly   199 EEERPLPDNEKQRKVWL--------LFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHY 255
            :::|....:|.|...|.        :.|.|:|....:|.|.:||..:..:.|..|:.|:|:|   
  Rat   183 QQQRQACHSEVQASRWARSMNQLREMVEDPQSGLPGKVFACLSVLFVATTAVSLCVSTMPDF--- 244

  Fly   256 KVFNTTTNGTKIEED--EVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDII 318
                      :.|||  |........|::||:|:.||:.|..:||:..|||..|.|..:|||||:
  Rat   245 ----------RAEEDKGECARKCYYIFVVETICVAWFSLEFCLRFVQAPNKCQFFRGPLNVIDIL 299

  Fly   319 AIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQ 383
            ||.||:::||  |::|.     |:|...|...|..:.:.| :|||:|.:|:..:.:|:|||.|||
  Rat   300 AISPYYVSLA--VSDES-----PEAGERPSGSSYLEKVGL-VLRVLRALRILYVMRLARHSLGLQ 356

  Fly   384 ILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSF-FKSIPDGFWWAVVTMTTVGYGD 447
            .||.|::...||.|||:.||.:.|.|||..||.||..|.... |.|||..:|||:::||||||||
  Rat   357 TLGLTVRRCAREFGLLLLFLGVAVTLFSPLVYVAENESGRVLEFTSIPASYWWAIISMTTVGYGD 421

  Fly   448 MRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY-HRETDQEEMQS-----QNFNHVTSCP 506
            |.|..|.|::|.....::|:|.:|.|...|...|::.| ..:.:||::|:     ||.|      
  Rat   422 MVPRSVPGQMVALSSILSGILIMAFPATSIFHTFSHSYLELKREQEQVQARLRRLQNNN------ 480

  Fly   507 YLPGTLGQHMKKSSLSESSSDMMDLDDGVESTPG 540
                       .:|..|..||:.||.....::||
  Rat   481 -----------SASERELLSDVDDLAPEDLTSPG 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 25/100 (25%)
BTB 99..182 CDD:197585 25/95 (26%)
Ion_trans 274..488 CDD:278921 90/215 (42%)
Ion_trans_2 403..479 CDD:285168 35/76 (46%)
Kcng4NP_001100905.1 BTB 60..167 CDD:197585 25/111 (23%)
BTB_2 60..159 CDD:280393 25/103 (24%)
Ion_trans 260..463 CDD:278921 90/210 (43%)
Ion_trans_2 397..457 CDD:285168 26/59 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.810

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