DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kqt-3

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001254403.1 Gene:kqt-3 / 191699 WormBaseID:WBGene00002235 Length:621 Species:Caenorhabditis elegans


Alignment Length:492 Identity:105/492 - (21%)
Similarity:187/492 - (38%) Gaps:136/492 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 ERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVF-VILLSIVIFCLETLPEFKHYKVFNTTTNG 264
            |||..        |..|.|.           .||| ::|:.:::..|.|:.|..|:         
 Worm    69 ERPTG--------WKCFLYH-----------FSVFLIVLICLILSVLSTVEEHSHF--------- 105

  Fly   265 TKIEEDEVPDITDPFFLIETLCIIWFTFELTVR---------FLACPNKLNFCRDVMNVIDIIAI 320
                      ..:..:::|.:.:::|:.|..||         ::....:|.|.|..:.:||::.:
 Worm   106 ----------AAELLYILEIVLVVFFSVEFIVRLWSAGCRSKYIGVYGRLKFVRKPITLIDLVVV 160

  Fly   321 I--PYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQ 383
            |  .:.|...|                      ..|..:.:.:|.||.:::.|:..:.|.....:
 Worm   161 ICSLFVICFGT----------------------EGQVFAASAMRGIRFLQILRMLHVDRQGGTWR 203

  Fly   384 ILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAE---AGSDS-SFFKSIPDGFWWAVVTMTTVG 444
            :||..:....:||...::..|:|::..|..||.||   .|.|. ..|.|..|..||.|:||||:|
 Worm   204 LLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDHIGVDGRQAFTSYADALWWGVITMTTIG 268

  Fly   445 YGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQNFNHVTSCPYLP 509
            |||:.|....|:||.|..:|..:...|||..::.|.|..     ..|::.:.::||.     .:|
 Worm   269 YGDVVPQTWLGRIVASCFSIFAISFFALPAGILGSGFAL-----KVQQKQRQKHFNR-----QIP 323

  Fly   510 --GTLGQHMKKSSLSE---SSSDMMDLDDGVESTPGLTETH--PGRSAVAPFLG---AQQQQQQP 564
              .||.|.:.:...:|   |::....:|.....|   .|||  .|:...:....   .:::|...
 Worm   324 AAATLIQCLWRCHAAEKKVSATWNAHIDPLAHET---KETHHWNGKKHASSMDSNNLTRKRQLFK 385

  Fly   565 VASSL--------SMSIDKQLQHPLQQLTQTQLYQQQQQQQQQQQN-----------GFKQQQQQ 610
            ..|||        |.|.|.:    :.:|.|.:|.:.::......:.           .::.::..
 Worm   386 KQSSLVNTFRRKGSPSTDVE----MGELQQERLLRHERNSDTDDEKRIYRVGADIEIDYETEEPT 446

  Fly   611 TQQQLQQQQSHTINASAAAATSGSGSSGLTMRHNNAL 647
            |..:.|...||...              ||..|.||:
 Worm   447 TPTRPQGHISHVCE--------------LTDAHRNAI 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393
BTB 99..182 CDD:197585
Ion_trans 274..488 CDD:278921 57/228 (25%)
Ion_trans_2 403..479 CDD:285168 32/79 (41%)
kqt-3NP_001254403.1 Ion_trans 108..313 CDD:278921 58/231 (25%)
Ion_trans_2 224..303 CDD:285168 32/78 (41%)
KCNQ_channel <460..560 CDD:281513 5/24 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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