DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kvs-3

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_505407.2 Gene:kvs-3 / 185719 WormBaseID:WBGene00018402 Length:451 Species:Caenorhabditis elegans


Alignment Length:422 Identity:127/422 - (30%)
Similarity:208/422 - (49%) Gaps:91/422 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 NEYFFDRSRPSFDAILYYYQSGGRLRRPVNV-------PLDV------FSEEIKFYELGDQAINK 189
            :||:|:||...|:.::.:|.: |:|.||:::       .||.      |.......|..:....|
 Worm    76 SEYYFERSPIIFEYVIDFYVT-GKLHRPMDICPIRLRYELDYWRIPTPFMSPCCILEENNNIAGK 139

  Fly   190 FREDEGFIKEEERPLPDN--------EKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCL 246
            ...::.|:   :..||.:        .::.|::.|.|.|.||..|::.::.|...:|||::...|
 Worm   140 MSTEKAFV---DSSLPSSCFDKVVLGPQRLKLYRLMENPRSSSGAKIFSVGSALFVLLSLLGLIL 201

  Fly   247 ETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFL---IETLCIIWFTFELTVRFLACPNKLNFC 308
            .::||.:              :|::     :|.:|   :|.||:::||||...|.|..|.|..|.
 Worm   202 SSMPELQ--------------DENK-----EPHYLLHWLELLCMVYFTFEYLARLLVNPKKAEFI 247

  Fly   309 RDVMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAM-------SLAILRVIRL 366
            |..:||||::.::|:.|                        ::.|:..       ::.::||:||
 Worm   248 RSPLNVIDLLTVLPFMI------------------------EAFNELQWMKEFRGAMLVVRVMRL 288

  Fly   367 VRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPD 431
            .||.|||||:|:|.||:..|.|:|.|..||.:|..||..|::|||:|:||.|....:|.|.|||.
 Worm   289 ARVARIFKLARYSTGLRAFGETMKKSAAELSMLGMFLVTGIMLFSTAIYFFERDEPNSKFYSIPA 353

  Fly   432 GFWWAVVTMTTVGYGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET------- 489
            ..||.|:|||||||||:.|:...||:|.:|.::.|::.:|.|:.:|:..|     .|:       
 Worm   354 ACWWCVITMTTVGYGDLVPITAGGKVVAALASVCGIIVLAFPISMIIDKF-----AESTGGWSGG 413

  Fly   490 DQEEMQSQNFNHVTSCPYLPGT-LGQHMKKSS 520
            |.:|.|.....|.|..|...|. ..|.:||.|
 Worm   414 DGDEEQGHMIVHRTVHPLNNGAPAAQPVKKKS 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 15/61 (25%)
BTB 99..182 CDD:197585 14/56 (25%)
Ion_trans 274..488 CDD:278921 81/223 (36%)
Ion_trans_2 403..479 CDD:285168 35/75 (47%)
kvs-3NP_505407.2 BTB 26..133 CDD:197585 15/57 (26%)
BTB_2 28..127 CDD:280393 14/51 (27%)
Ion_trans 206..407 CDD:278921 84/248 (34%)
Ion_trans_2 324..405 CDD:285168 37/85 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.810

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