DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and shl-1

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_500975.2 Gene:shl-1 / 177400 WormBaseID:WBGene00022240 Length:578 Species:Caenorhabditis elegans


Alignment Length:552 Identity:179/552 - (32%)
Similarity:281/552 - (50%) Gaps:108/552 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 GGGPQHFEPIPH------------DHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRY 132
            |..|...:|:|.            ||...|::.||:||.||||...||.:||:||||...:.. :
 Worm    17 GWVPISRQPMPQAPVAIQAKDLAVDHVSDEKLAINISGRRFETWKNTLEKFPETLLGSNEKEF-F 80

  Fly   133 FDPLRNEYFFDRSRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAI---------N 188
            :|....||||||....|..||.:|:: |:|..|.:..|..:.||:.|:.:....|         :
 Worm    81 YDEDTGEYFFDRDPDIFRHILTFYRT-GKLHYPRHECLVAYDEELSFFGIMPDLISDCCYEDYKD 144

  Fly   189 KFREDEGFIKEEERPLPDNEK-----QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLET 248
            |.||::..::||.....|...     :.|:|..||.|.::..|.|...:..|.|.:|::...:||
 Worm   145 KKRENQERLQEERVENADISTLKLSLKEKMWAAFENPHTTSIALVFYYVIGFFIAVSVMCNIVET 209

  Fly   249 LPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMN 313
            :|  ..|:...:.|.|...||.        ||:|:|.|:|.||.|..:|.::.|:::.|.|.:|:
 Worm   210 IP--CGYEDNVSVTCGEAYEEQ--------FFVIDTACVIIFTIEYFLRLISAPDRIKFMRSIMS 264

  Fly   314 VIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRH 378
            |||:|||:||:::|  |:.:.:|...|                    ...:|:.|||||||.|||
 Worm   265 VIDVIAIMPYYVSL--VLTDNKDVSGL--------------------FVTLRVFRVFRIFKFSRH 307

  Fly   379 SKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTV 443
            |:||:|||.|||:...|||.|:|.|.:.:::|::.:|:||...|::.|.|||..||:.:||:||:
 Worm   308 SQGLRILGYTLKSCASELGFLVFSLAMAIIIFATIMYYAEKKVDATRFTSIPSAFWYTIVTLTTL 372

  Fly   444 GYGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQNFNHVTSCPYL 508
            |||||.|..:.|||||.:|:::|||.||||||||||||:..||:....::.::|           
 Worm   373 GYGDMVPSTIMGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQ----------- 426

  Fly   509 PGTLGQHMKKSSLSESSSDMMDLDDGVESTPGLTETHPGRSAVAPFLGAQQQQQQPVASSLSMSI 573
                    ||:.|:....        |::..||...:..|:..|..|..:|..         :|.
 Worm   427 --------KKARLARIRI--------VKNASGLALFNKKRAHEARMLAFEQGH---------LSF 466

  Fly   574 DK-------QLQHP-----LQQLTQTQLYQQQ 593
            |.       ::||.     |::.|:.:..:.:
 Worm   467 DALRDEDIFEIQHHHLLQCLEKATEREFVESE 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 34/87 (39%)
BTB 99..182 CDD:197585 34/82 (41%)
Ion_trans 274..488 CDD:278921 96/213 (45%)
Ion_trans_2 403..479 CDD:285168 39/75 (52%)
shl-1NP_500975.2 BTB_POZ 6..149 CDD:365784 44/133 (33%)
Ion_trans 187..416 CDD:366146 108/260 (42%)
DUF3399 460..528 CDD:371777 7/48 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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