DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and KCNG3

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_579875.1 Gene:KCNG3 / 170850 HGNCID:18306 Length:436 Species:Homo sapiens


Alignment Length:450 Identity:145/450 - (32%)
Similarity:231/450 - (51%) Gaps:65/450 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 VVINVSGLRFETQLRTLNQFP----DTLLGDPARR-----LRYFDPLRNEYFFDRSRPSFDAILY 154
            ||:||.|.|:......|..||    ..|.|..:.|     ...:|..||||||||...:|..||.
Human    11 VVLNVGGARYSLSRELLKDFPLRRVSRLHGCRSERDVLEVCDDYDRERNEYFFDRHSEAFGFILL 75

  Fly   155 YYQSGGRLR-RPVNVPLDVFSEEIKF------------YELGDQAINKF----REDEGFI-KEEE 201
            |.:..|:|| .|....|..::|.|.:            ..|.|:..:.:    .::.|.: ::|.
Human    76 YVRGHGKLRFAPRMCELSFYNEMIYWGLEGAHLEYCCQRRLDDRMSDTYTFYSADEPGVLGRDEA 140

  Fly   202 RPLPDNEKQRKVWL-----LFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTT 261
            ||........:.||     .||.|.||.||:::|.:||..:::|:|:.|..|||:::     |..
Human   141 RPGGAEAAPSRRWLERMRRTFEEPTSSLAAQILASVSVVFVIVSMVVLCASTLPDWR-----NAA 200

  Fly   262 TNGTKIEE----DEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIP 322
            .:...:::    ...|. .:|..:||.:||.|||.|..|||:...||..|.:..:|:||::||.|
Human   201 ADNRSLDDRSRYSAGPG-REPSGIIEAICIGWFTAECIVRFIVSKNKCEFVKRPLNIIDLLAITP 264

  Fly   323 YFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGR 387
            |:|::...|...|:: .|.:|.|:              |||:|::|:|.:.||:||..|||.||.
Human   265 YYISVLMTVFTGENS-QLQRAGVT--------------LRVLRMMRIFWVIKLARHFIGLQTLGL 314

  Fly   388 TLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSD----SSFFKSIPDGFWWAVVTMTTVGYGDM 448
            |||...||:.:|:.|:.:.:.:||:.....|.|.|    :..|.|||...||.:::|||||||||
Human   315 TLKRCYREMVMLLVFICVAMAIFSALSQLLEHGLDLETSNKDFTSIPAACWWVIISMTTVGYGDM 379

  Fly   449 RPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQNFNHVTSCPYL 508
            .|:.|.|:|:|.:|.::|::.:|||:..|..:|...||    :.:.:|..::...|..:|
Human   380 YPITVPGRILGGVCVVSGIVLLALPITFIYHSFVQCYH----ELKFRSARYSRSLSTEFL 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 34/109 (31%)
BTB 99..182 CDD:197585 32/104 (31%)
Ion_trans 274..488 CDD:278921 84/217 (39%)
Ion_trans_2 403..479 CDD:285168 31/79 (39%)
KCNG3NP_579875.1 BTB_POZ_KCNG3 11..122 CDD:349729 34/110 (31%)
Ion_trans 219..420 CDD:395416 84/219 (38%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 373..378 4/4 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.810

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