DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and Kcns1

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_032461.2 Gene:Kcns1 / 16538 MGIID:1197019 Length:497 Species:Mus musculus


Alignment Length:517 Identity:153/517 - (29%)
Similarity:247/517 - (47%) Gaps:109/517 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 PHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLG--------DPARRL-RYFDPLRNEYFFDRS 145
            |.|    |.:.:||.|:|.....|.|.:||.|.||        :.|||| ..:|...:|::|||.
Mouse    16 PRD----EALRVNVGGVRRLLSARALARFPGTRLGRLQAAASEEQARRLCDDYDAAAHEFYFDRH 76

  Fly   146 RPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAI----------------NKFREDE 194
            ...|..:|::|:: |.|.....:.:..|.:|..::.||:.|:                ..:.||.
Mouse    77 PGFFLGLLHFYRT-GHLHVLDELCVFAFGQEADYWGLGENALATCCRARYLERRVARPRAWDEDS 140

  Fly   195 GFIKEEERPLPD-----------------NEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIV 242
            ......: |.||                 ...:|::||..|.|..|..:::.:.:|:.|:|.||.
Mouse   141 DAPSSVD-PCPDEISDVQRELARYGAARCGRLRRRLWLTMENPGYSLPSKLFSCVSIGVVLASIA 204

  Fly   243 IFCLETLPEFKHYK---VFNTTTNGTKIEEDEVPDITDPFF-LIETLCIIWFTFELTVRFLACPN 303
            ..|:.:|||::..:   .......|...|  ||.|  ||.. .:|..||.||:||::.|.|..|:
Mouse   205 AMCIHSLPEYQAREAAAAVAAVAAGRSAE--EVRD--DPVLRRLEYFCIAWFSFEVSSRLLLAPS 265

  Fly   304 KLNFCRDVMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMS--LAILRVIRL 366
            ..||....:|:|||::::|:::||            |..|.:..|..:|.:.:.  ..:::|.||
Mouse   266 TRNFFCHPLNLIDIVSVLPFYLTL------------LAGAALGDQRGASGEELGDLGKVVQVFRL 318

  Fly   367 VRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPD 431
            :|:||:.||:|||.||:.||.|||.|.||:|:|:.:|.:||.:||...|.||  .::..|.:||.
Mouse   319 MRIFRVLKLARHSTGLRSLGATLKHSYREVGILLLYLAVGVSVFSGVAYTAE--EENEGFHTIPA 381

  Fly   432 GFWWAVVTMTTVGYGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQS 496
            .:||..|:||||||||:.|..|.||:..|.|.:.|:|.:|||:.:|.:.|::||.|:        
Mouse   382 CWWWGTVSMTTVGYGDVVPETVGGKLAASGCILGGILVVALPITIIFNKFSHFYRRQ-------- 438

  Fly   497 QNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMDLDDGVESTPGLTE---------THPGRS 549
                                |....:..||...:.:|.:.|..|:::         :..|||
Mouse   439 --------------------KALEAAVRSSGQREFEDLLSSVDGVSDVSLETSRDTSQEGRS 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 29/96 (30%)
BTB 99..182 CDD:197585 27/91 (30%)
Ion_trans 274..488 CDD:278921 86/216 (40%)
Ion_trans_2 403..479 CDD:285168 34/75 (45%)
Kcns1NP_032461.2 BTB_POZ 21..126 CDD:365784 30/105 (29%)
Ion_trans 188..439 CDD:395416 100/296 (34%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 392..397 4/4 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 464..497 3/17 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.810

Return to query results.
Submit another query.