DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and Kcnc3

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_036008594.1 Gene:Kcnc3 / 16504 MGIID:96669 Length:807 Species:Mus musculus


Alignment Length:582 Identity:193/582 - (33%)
Similarity:272/582 - (46%) Gaps:151/582 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 HGFGGGPQHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLG---DPARRLRY-FDPLR 137
            ||.|||..            .::||||.|:|.||...||...|.|.|.   :|....|: :||..
Mouse    82 HGGGGGDS------------GKIVINVGGVRHETYRSTLRTLPGTRLAGLTEPEAAARFDYDPGT 134

  Fly   138 NEYFFDRSRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAI--------NKFREDE 194
            :|:||||....|..:|.||:: |:|..|.:|...:|.||:.|:.:.:..:        .:.|:.|
Mouse   135 DEFFFDRHPGVFAYVLNYYRT-GKLHCPADVCGPLFEEELGFWGIDETDVEACCWMTYRQHRDAE 198

  Fly   195 GFIKEEERP-----------------LPD------------------------------------ 206
            ..:...|.|                 |.|                                    
Mouse   199 EALDSFEAPDSSANANANAGGAHDAGLDDEAGAGGGGLDGAGGELKRLCFQDAGGGAGGPAGGAG 263

  Fly   207 -------NEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTT-- 262
                   ...|.:||.|||.|.||:|||.||..|:|.||:||..|||||...|.|  :.|.|.  
Mouse   264 GAGGTWWRRWQPRVWALFEDPYSSRAARYVAFASLFFILISITTFCLETHEGFIH--ISNKTVTQ 326

  Fly   263 ----------NGTKIEEDEVPDITDPFF-LIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVID 316
                      |.|.:|.:     |:||. .:|.:|::|||||..:|...||:|:.|.:..:|:||
Mouse   327 ASPIPGAPPENITNVEVE-----TEPFLTYVEGVCVVWFTFEFLMRVTFCPDKVEFLKSSLNIID 386

  Fly   317 IIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMS-LAILRVIRLVRVFRIFKLSRHSK 380
            .:||:|:::                  .|.....||..|.. |..|||:|.||:.|||||:||..
Mouse   387 CVAILPFYL------------------EVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFV 433

  Fly   381 GLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAE---------AGSDSSFFKSIPDGFWWA 436
            ||::||.||:||..|..|||.||.:||::|::.:|:||         .||:.::||:||.|||||
Mouse   434 GLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWA 498

  Fly   437 VVTMTTVGYGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQNFNH 501
            ||||||:|||||.|....|.:||:|||:|||||||:||||||:||..:|.....::::..:...|
Mouse   499 VVTMTTLGYGDMYPKTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKH 563

  Fly   502 VTSCPYLPGTLGQHMKKSSLSESSSDMMDLDDGVESTPGLT----------------ETHPG 547
            :...|. ||: ..:.|................|:...|.:|                .||||
Mouse   564 IPRPPQ-PGS-PNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVNVAGAYPPGPHTHPG 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 34/91 (37%)
BTB 99..182 CDD:197585 34/86 (40%)
Ion_trans 274..488 CDD:278921 104/224 (46%)
Ion_trans_2 403..479 CDD:285168 48/84 (57%)
Kcnc3XP_036008594.1 BTB_KCNC1_3 91..204 CDD:349721 36/113 (32%)
Ion_trans 290..551 CDD:395416 126/285 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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