DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and Kcnd1

DIOPT Version :10

Sequence 1:NP_728123.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001099218.1 Gene:Kcnd1 / 116695 RGDID:621364 Length:650 Species:Rattus norvegicus


Alignment Length:426 Identity:167/426 - (39%)
Similarity:243/426 - (57%) Gaps:63/426 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 ERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDRSRPSFDAILYYYQSGGR 161
            |.:|:||||.||||...||:::||||||...:.. ::|....||||||....|..:|.:|:: ||
  Rat    40 EVLVVNVSGRRFETWKNTLDRYPDTLLGSSEKEF-FYDAESGEYFFDRDPDMFRHVLNFYRT-GR 102

  Fly   162 LRRPVNVPLDVFSEEIKFYEL-----GDQAINKFR-----------EDEGFIKEEERP-LPDNEK 209
            |..|....:..|.||:.||.|     ||..:.::|           |||...:..|.| ||....
  Rat   103 LHCPRQECIQAFDEELAFYGLVPELVGDCCLEEYRDRKKENAERLAEDEEAEQAGEGPALPAGSS 167

  Fly   210 QR-KVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNG-----TKIE 268
            .| ::|..||.|.:|.||.|...::.|.|.:|::...:||:|           ..|     ||.:
  Rat   168 LRQRLWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIP-----------CRGPARWPTKEQ 221

  Fly   269 E--DEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYFITLATVV 331
            .  |..|   ..||.::|.|::.||.|..:|..|.|::..|.|.||::||::||:||:|.|.   
  Rat   222 PCGDRFP---TAFFCMDTACVLIFTGEYLLRLFAAPSRCRFLRSVMSLIDVVAILPYYIGLF--- 280

  Fly   332 AEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMREL 396
                    :||          |..:|.|.: .:|:.|||||||.||||:||:|||.|||:...||
  Rat   281 --------VPK----------NDDVSGAFV-TLRVFRVFRIFKFSRHSQGLRILGYTLKSCASEL 326

  Fly   397 GLLIFFLFIGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDMTPVGVWGKIVGSL 461
            |.|:|.|.:.:::|::.:::||.|:..:.|.|||.|||:.:|||||:|||||.|..:.|||.||:
  Rat   327 GFLLFSLTMAIIIFATVMFYAEKGTSKTNFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSI 391

  Fly   462 CAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQ 497
            |:::|||.||||||||||||:..||:....::.::|
  Rat   392 CSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQ 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_728123.1 BTB_POZ 97..223 CDD:453885 53/143 (37%)
Ion_trans 226..488 CDD:459842 111/268 (41%)
Kcnd1NP_001099218.1 BTB_POZ 6..143 CDD:453885 41/104 (39%)
Ion_trans 185..417 CDD:459842 110/267 (41%)
DUF3399 470..550 CDD:463381
Blue background indicates that the domain is not in the aligned region.

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