DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and LOC100537815

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_003198877.1 Gene:LOC100537815 / 100537815 -ID:- Length:493 Species:Danio rerio


Alignment Length:471 Identity:317/471 - (67%)
Similarity:366/471 - (77%) Gaps:38/471 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 GGPQHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDRS 145
            |.||.::| ..:.:.|||||||:|||||||||:||:|||:||||||.:|:||||||||||||||:
Zfish    17 GLPQDYDP-GTEQECCERVVINISGLRFETQLKTLSQFPETLLGDPKKRMRYFDPLRNEYFFDRN 80

  Fly   146 RPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKFREDEGFIKEEERPLPDNEKQ 210
            |||||||||||||||||||||||.||||||||:||||||:||..|||||||||||||||||||.|
Zfish    81 RPSFDAILYYYQSGGRLRRPVNVTLDVFSEEIRFYELGDEAIEIFREDEGFIKEEERPLPDNEFQ 145

  Fly   211 RKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKH---------YKVFNTTTNGTK 266
            ::|||||||||||..||::|||||.|||:|||.|||||||.|:.         ..|.|:||:.|.
Zfish   146 KQVWLLFEYPESSGPARIIAIISVMVILISIVSFCLETLPIFRSDEEEMHKVPVNVNNSTTSYTS 210

  Fly   267 IEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYFITLATVV 331
            ..      .|||||::||||||||:||..|||.|||:|.:|..::||:||::|||||||||.|.:
Zfish   211 TY------FTDPFFILETLCIIWFSFEFLVRFFACPSKASFFVNIMNMIDVVAIIPYFITLGTEL 269

  Fly   332 AEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMREL 396
            ||:.:           ..:...|||||||||||||||||||||||||||||||||:|||||||||
Zfish   270 AEKAE-----------DGQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMREL 323

  Fly   397 GLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMRPVGVWGKIVGSL 461
            |||||||||||:|||||||||||....|.|.||||.||||||:|||||||||.|..:.|||||||
Zfish   324 GLLIFFLFIGVILFSSAVYFAEADEPESQFYSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSL 388

  Fly   462 CAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQ----NFNHVTSCPYLPGTLGQHMKKSSLS 522
            ||||||||||||||||||||||||||||:.|| |:|    |.....|...|.|:      :|..:
Zfish   389 CAIAGVLTIALPVPVIVSNFNYFYHRETEGEE-QAQYLQVNVPKADSQEELKGS------RSGST 446

  Fly   523 ESSSDMMDLDDGVEST 538
            .|.||.|::.:||.::
Zfish   447 ISKSDYMEIQEGVNNS 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 76/87 (87%)
BTB 99..182 CDD:197585 72/82 (88%)
Ion_trans 274..488 CDD:278921 157/213 (74%)
Ion_trans_2 403..479 CDD:285168 61/75 (81%)
LOC100537815XP_003198877.1 BTB_2 34..123 CDD:308049 77/88 (88%)
Ion_trans 161..415 CDD:306908 183/270 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 354 1.000 Domainoid score I952
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 607 1.000 Inparanoid score I890
OMA 1 1.010 - - QHG48093
OrthoDB 1 1.010 - - D307298at33208
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 1 1.000 - - otm24559
orthoMCL 1 0.900 - - OOG6_101149
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.880

Return to query results.
Submit another query.