DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcnq2b

DIOPT Version :10

Sequence 1:NP_728123.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_068078185.1 Gene:kcnq2b / 100537363 ZFINID:ZDB-GENE-120130-1 Length:872 Species:Danio rerio


Alignment Length:430 Identity:94/430 - (21%)
Similarity:168/430 - (39%) Gaps:98/430 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 ERPLPDNEKQRKVW-LLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNG 264
            :||...|...|::. .|:...|..:....:....||:::.|.::.           .||:|....
Zfish    65 KRPPKRNAFYRRLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVL-----------SVFSTIKEY 118

  Fly   265 TKIEEDEVPDITDPFFLIETLCIIWFTFELTV---------RFLACPNKLNFCRDVMNVIDIIAI 320
            .|..||.:       :::|.:.|:.|..|..|         |:.....:|.|.|....||||:.:
Zfish   119 EKSSEDAL-------YILEIVTIVVFGVEYIVRIWSAGCCCRYRGWRGRLKFARKPFCVIDIMVL 176

  Fly   321 IPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQIL 385
            |.....||.                    .:.....:.:.:|.:|.:::.|:.::.|.....::|
Zfish   177 IASISVLAA--------------------GTQGNVFATSAIRSLRFLQILRMIRMDRRGGTWKLL 221

  Fly   386 GRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDMTP 450
            |..:.|..:||....:..|:.::|.|..||.||. .:|..|::..||.||.::|:||:||||..|
Zfish   222 GSVVYAHSKELITAWYIGFLCLILASFLVYLAEK-EDNEMFETYADALWWGLITLTTIGYGDKYP 285

  Fly   451 VGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQ-----------------N 498
            :...|:::.:...:.||...|||..::.|.|......:..|:..:.:                 |
Zfish   286 ITWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQAAWRFYATN 350

  Fly   499 FNHV---TSCPYLPGTLGQHM-----------------KKSSLS--------ESSSDMMDLDDGV 535
            .|..   ::..|...|:...|                 .||.||        .|.|..:.|.:.|
Zfish   351 LNRTDLYSTWDYYERTISVPMYRLIPPLNQLDLLRNLKSKSGLSFRKEAQPEPSPSQKVSLKERV 415

  Fly   536 ESTPGLTETHPGRSAVAPFLGAQQQQQQPVASSLSMSIDK 575
            .|:|..:.| .|:::..   |.|..::.|.|:|:..|..|
Zfish   416 FSSPRNSAT-KGKNSPQ---GQQSLRRSPSANSIEDSPSK 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_728123.1 BTB_POZ 97..223 CDD:453885 6/22 (27%)
Ion_trans 226..488 CDD:459842 63/270 (23%)
kcnq2bXP_068078185.1 Ion_trans 92..324 CDD:459842 63/270 (23%)
KCNQ_channel 439..656 CDD:460954 5/13 (38%)
KCNQ2_u3 670..751 CDD:465213
KCNQC3-Ank-G_bd 783..869 CDD:463411
Blue background indicates that the domain is not in the aligned region.

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