DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcnv2

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_002934230.1 Gene:kcnv2 / 100498412 XenbaseID:XB-GENE-940169 Length:562 Species:Xenopus tropicalis


Alignment Length:574 Identity:150/574 - (26%)
Similarity:251/574 - (43%) Gaps:99/574 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GLYGLGEDR---QHRKKQQQQQQ----HQKEQLEQKEEQKKIAERKLQLREQQLQRNSLDGYGSL 63
            |.|.:.:||   .|....|...:    :..|..|...|:.|.|||         :...|||: ..
 Frog    22 GQYVVDDDRIRLSHNNSNQLFSESSYIYYIEDEEDDVEELKWAER---------EEKRLDGW-KK 76

  Fly    64 PKLSSQDEEGGAGHGFGGGPQHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLG---- 124
            ..:::|.|.|.......|  :...|..:.....:.:.|||.|..:.........:|.:.:|    
 Frog    77 QSIAAQKERGIYEEEQDG--RILSPSYYGKKRRKSLHINVGGTSYRISYGVAASYPKSRIGRLAT 139

  Fly   125 --DPARRLRYFD---PLRNEYFFDRSRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGD 184
              |..|:|...|   |..:.|||||....|..|..:|::|....|....|.. |.|||.::.:..
 Frog   140 YTDRQRKLDLCDDYSPKEDVYFFDRDPAIFHHIYNFYRTGVLWVRDELCPRS-FLEEINYWGVRV 203

  Fly   185 QAINK-----FREDEGFIKEE---------ERPLPDNEK----------QRKVWLLFEYPESSQA 225
            :...:     |.|.:..:.|:         |....:||:          :|::|.:.|.|.||..
 Frog   204 KHTPRCCRISFEERQDDLNEQLKVQRELRAEMETEENEELFRGMLYGHLRRRIWNMMEKPFSSVT 268

  Fly   226 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWF 290
            |:.:|:.|.|.:|:|:|...|.|:.:.::.......:....:|.            :|||||.:|
 Frog   269 AKAIAVASSFFVLISVVAMTLNTVEDMQYKNAAGLPSGKPYLEH------------VETLCITFF 321

  Fly   291 TFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQA 355
            |.|..:|.::.|:..:|.|.|:|.:|:|||:|.::.:......:||.          ..|.|:..
 Frog   322 TLEYLLRLMSTPDLQHFGRSVLNAVDLIAILPLYLQMLLESFADEDR----------SGKGSSHE 376

  Fly   356 MSL----------AILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVLF 410
            ..:          .:||::||:|:|||.||:|||.||:..|.||:...:::|.|..|:.:||..|
 Frog   377 HEIEAVGRVGKLGQVLRIMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLFLFIAMGVFSF 441

  Fly   411 SSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMRPVGVWGKIVGSLCAIAGVLTIALPVP 475
            |:.||..|.....:.|.|||..:|||.|:::||||||:.|....|::...||...|::...:|:.
 Frog   442 SAMVYSVEHDVSGTNFTSIPHAWWWAAVSISTVGYGDVYPETHLGRLFAFLCIAFGIILNGMPIS 506

  Fly   476 VIVSNFNYFYHRETDQE-----------EMQSQNFNHVTSC---PYLPGTLGQH 515
            ::.:.|:.:|.:....|           ....:....|.||   |.:|.|.|.:
 Frog   507 ILYNKFSDYYSKLKSYEYTTIRKKRGKVHFTGRAVQKVNSCCCGPPVPNTPGHN 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 26/96 (27%)
BTB 99..182 CDD:197585 26/91 (29%)
Ion_trans 274..488 CDD:278921 73/223 (33%)
Ion_trans_2 403..479 CDD:285168 27/75 (36%)
kcnv2XP_002934230.1 BTB 112..212 CDD:197585 26/100 (26%)
BTB 112..201 CDD:295341 26/89 (29%)
Ion_trans 310..520 CDD:278921 74/231 (32%)
Ion_trans_2 445..508 CDD:285168 23/62 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

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