DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and kcna10

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_002938481.1 Gene:kcna10 / 100497698 XenbaseID:XB-GENE-991589 Length:499 Species:Xenopus tropicalis


Alignment Length:528 Identity:287/528 - (54%)
Similarity:365/528 - (69%) Gaps:61/528 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 EQLEQKEEQKKIAERKLQLREQQLQRNSLDGYGSLPKLSSQDEEGGAGHGFGGGPQHFEPIPHDH 93
            |..|:.|..|.::..|:.:.....|..:....|: ..|:::.|             ||......|
 Frog     9 EHPEETELHKDVSATKVAISSYVNQNLNWKAPGN-ENLNNETE-------------HFRFNSKSH 59

  Fly    94 DFC------------ERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDRSR 146
            | |            :||.||::||||||.|:||::|||||||||.:|:.|||.:||||||||:|
 Frog    60 D-CLFLELMSMEEGDQRVFINIAGLRFETHLKTLSEFPDTLLGDPKKRIHYFDSMRNEYFFDRNR 123

  Fly   147 PSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKFREDEGFIKEEERPLPDNEKQR 211
            ||||.|||||||||::|||.|||:|||::||.|||||::|:::||:||||:|:.|.|||.|:..:
 Frog   124 PSFDGILYYYQSGGKIRRPANVPIDVFADEINFYELGNEAMDQFRDDEGFLKDPEIPLPTNDYYK 188

  Fly   212 KVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYK-VFNTTTNGTKIEEDEVPD- 274
            :.||||||||||.|||.:|::||.||::||:|||:||||||:..: ::.....|...|....|. 
 Frog   189 QFWLLFEYPESSTAARGMALVSVLVIIISILIFCMETLPEFREERDLYFYRGTGNYSESTTHPST 253

  Fly   275 ITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYFITLATVVAEEEDTLN 339
            .|||||:|||.||.||:|||.|||:.||:...|.|::||:||:::|||||:||.|.:.::.:   
 Frog   254 FTDPFFMIETTCIAWFSFELVVRFVVCPSTSAFFRNIMNIIDLVSIIPYFVTLVTELFKQTE--- 315

  Fly   340 LPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLF 404
                ||..|:      |||||||::||||||||||||||||||||||:|||||||||||||||||
 Frog   316 ----PVGQQN------MSLAILRIVRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLF 370

  Fly   405 IGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMRPVGVWGKIVGSLCAIAGVLT 469
            |||:||||||||||.....|.|.|||||||||||||||||||||.|:.:.||:||:|||||||||
 Frog   371 IGVILFSSAVYFAEVDEPQSQFLSIPDGFWWAVVTMTTVGYGDMCPITLSGKVVGTLCAIAGVLT 435

  Fly   470 IALPVPVIVSNFNYFYHRETDQEEMQSQNFNHVTSCPYLP--------GTLGQHMKKSSLSESSS 526
            ||||||||||||||||||||:.||..|           ||        |.|.:....|||.:::.
 Frog   436 IALPVPVIVSNFNYFYHRETENEERHS-----------LPVEVEKISLGNLIRAGSSSSLKKNNG 489

  Fly   527 DMMDLDDG 534
            ..:...:|
 Frog   490 SCVSDKNG 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 63/87 (72%)
BTB 99..182 CDD:197585 60/82 (73%)
Ion_trans 274..488 CDD:278921 150/214 (70%)
Ion_trans_2 403..479 CDD:285168 60/75 (80%)
kcna10XP_002938481.1 BTB_POZ 74..200 CDD:365784 85/125 (68%)
Ion_trans 246..454 CDD:366146 152/220 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 361 1.000 Domainoid score I949
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48093
OrthoDB 1 1.010 - - D307298at33208
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.030

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