DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcng2

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_017950308.2 Gene:kcng2 / 100497537 XenbaseID:XB-GENE-954003 Length:489 Species:Xenopus tropicalis


Alignment Length:440 Identity:136/440 - (30%)
Similarity:217/440 - (49%) Gaps:60/440 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 DFCERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRY---------FDPLRNEYFFDRSRPSF 149
            |....|:|||.|:::.....||...|.|.||.......|         :|...||:||||:..:|
 Frog    58 DRTRHVIINVGGIKYRIPWTTLENCPLTRLGKLKTCNNYDEIMDVCDDYDINCNEFFFDRNPCAF 122

  Fly   150 DAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAIN-----------------KFREDEGFI 197
            ..|:.:. :.|:||....:....|.||:.::.:.::.:.                 |..|.|..|
 Frog   123 RTIMTFL-AAGKLRILREMCALSFQEELIYWGIEEEQLEWCCLRKLQQKEEELAEAKMYEGESGI 186

  Fly   198 KEE--ERPLPDNEK----QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYK 256
            ..|  :..|.|:.:    .:.:..:.|.|.|....::.|.:||..:.::.|..|:.|:|:|:.  
 Frog   187 SNENSQSALQDSGRLAQCMKHLRDMVENPHSGIPGKIFACLSVSFVAITAVSLCISTMPDFRD-- 249

  Fly   257 VFNTTTNGTKIEED--EVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIA 319
                       |||  |........|::||:|:.||:.|..:||:...:|..|.|..:|:|||:|
 Frog   250 -----------EEDRGECSQKCYDIFVLETVCVAWFSLEFVLRFIQAESKCVFLRTPLNMIDIMA 303

  Fly   320 IIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQI 384
            |:||:|||..      |.|:..|...:..:......:   :|||:|.:|:..:.:|:|||.|||.
 Frog   304 ILPYYITLIV------DALSGGKTGGAGNNYLEKVGL---VLRVLRALRILYVMRLARHSLGLQT 359

  Fly   385 LGRTLKASMRELGLLIFFLFIGVVLFSSAVYFA--EAGSDSSFFKSIPDGFWWAVVTMTTVGYGD 447
            ||.|::...||.|||:.||.:.:.|||..||.|  |.|:... |.|||..:||||::||||||||
 Frog   360 LGLTVRRCTREFGLLLLFLCVAMALFSPLVYLAENELGAKQE-FTSIPGSYWWAVISMTTVGYGD 423

  Fly   448 MRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQ 497
            |.|..:.|::|.....::|:|.:|.||..|...|:..|....:|::..|:
 Frog   424 MVPRSIPGQVVALSSILSGILLMAFPVTSIFHTFSRSYTELKEQQQRASR 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 27/96 (28%)
BTB 99..182 CDD:197585 27/91 (30%)
Ion_trans 274..488 CDD:278921 84/215 (39%)
Ion_trans_2 403..479 CDD:285168 35/77 (45%)
kcng2XP_017950308.2 BTB_POZ_KCNG1_2 58..171 CDD:349728 28/113 (25%)
Ion_trans 222..465 CDD:395416 96/265 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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