DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcna2

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_031752644.1 Gene:kcna2 / 100496794 XenbaseID:XB-GENE-991578 Length:499 Species:Xenopus tropicalis


Alignment Length:468 Identity:320/468 - (68%)
Similarity:370/468 - (79%) Gaps:32/468 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 GGPQ-HFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDR 144
            |.|| .::|.| ||:.|||||||:|||||||||:||:|||:||||||.:|:||||||||||||||
 Frog    17 GHPQDSYDPEP-DHECCERVVINISGLRFETQLKTLSQFPETLLGDPKKRMRYFDPLRNEYFFDR 80

  Fly   145 SRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKFREDEGFIKEEERPLPDNEK 209
            :||||||||||||||||||||||||||:|||||:|||||::|:..|||||||||||||||||||.
 Frog    81 NRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEIFREDEGFIKEEERPLPDNEY 145

  Fly   210 QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFK------------HYKVFNTTT 262
            |::|||||||||||..||::|||||.|||:|||.|||||||.|:            :|...|:|.
 Frog   146 QKQVWLLFEYPESSGPARIIAIISVMVILISIVSFCLETLPVFRDENEDMHGSGVNYYPYSNSTV 210

  Fly   263 NGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYFITL 327
            ...|..     ..|||||::||||||||:||..|||.|||:|..|..::||:|||:|||||||||
 Frog   211 RYQKSN-----TFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITL 270

  Fly   328 ATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKAS 392
            .|.:||:.:           ..:...|||||||||||||||||||||||||||||||||:|||||
 Frog   271 GTELAEKTE-----------DGQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKAS 324

  Fly   393 MRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMRPVGVWGKI 457
            |||||||||||||||:|||||||||||....|.|.||||.||||||:|||||||||.|..:.|||
 Frog   325 MRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKI 389

  Fly   458 VGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQNFNHVTSCPYLPGTLGQHMKKSSLS 522
            ||||||||||||||||||||||||||||||||:.|| |:| :..|||||.:|.:......:|:.:
 Frog   390 VGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEE-QAQ-YLQVTSCPKIPSSPDLQKSRSAST 452

  Fly   523 ESSSDMMDLDDGV 535
            .|.||.|::.:||
 Frog   453 LSKSDYMEIQEGV 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 75/87 (86%)
BTB 99..182 CDD:197585 72/82 (88%)
Ion_trans 274..488 CDD:278921 158/213 (74%)
Ion_trans_2 403..479 CDD:285168 61/75 (81%)
kcna2XP_031752644.1 BTB_POZ 33..159 CDD:365784 107/125 (86%)
Ion_trans 162..420 CDD:395416 183/273 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 361 1.000 Domainoid score I949
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 624 1.000 Inparanoid score I853
OMA 1 1.010 - - QHG48093
OrthoDB 1 1.010 - - D307298at33208
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 1 1.000 - - otm49432
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.980

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