DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcna6

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_004912861.1 Gene:kcna6 / 100492986 XenbaseID:XB-GENE-1010669 Length:481 Species:Xenopus tropicalis


Alignment Length:480 Identity:323/480 - (67%)
Similarity:368/480 - (76%) Gaps:39/480 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 SLPKLSSQDEEGGAGHGFGGGPQHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDP 126
            :|..||:..:||            ::|.....|.|||||||:||||||||||||:|||.||||||
 Frog    12 TLVSLSALGQEG------------YDPDRATQDCCERVVINISGLRFETQLRTLSQFPQTLLGDP 64

  Fly   127 ARRLRYFDPLRNEYFFDRSRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKFR 191
            .:|:|:||||||||||||:||||||||||||||||||||||||:|:|.|||||||||::.|..||
 Frog    65 RKRMRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPVDIFLEEIKFYELGEEVIEIFR 129

  Fly   192 EDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFK--- 253
            :|||||||||||||:|:.||:|||||||||||..||.:||:||.:||:|||||||||||||:   
 Frog   130 DDEGFIKEEERPLPENDFQRQVWLLFEYPESSGPARGIAIVSVLIILISIVIFCLETLPEFREEA 194

  Fly   254 HYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDII 318
            .........|||....:.  ..||||||.||||||||:|||.|||.|||:|..|.:::||||||:
 Frog   195 RQSGGQPAVNGTHTFTNS--PFTDPFFLTETLCIIWFSFELLVRFFACPSKPAFFKNMMNVIDIV 257

  Fly   319 AIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQ 383
            |||||||||.|.:||:             |..:..||||||||||||||||||||||||||||||
 Frog   258 AIIPYFITLGTELAEQ-------------QGSNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQ 309

  Fly   384 ILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDM 448
            |||:||:|||||||||||||||||:||||||||||.....|.|.||||.||||||:|||||||||
 Frog   310 ILGKTLQASMRELGLLIFFLFIGVILFSSAVYFAETDDPESLFTSIPDAFWWAVVSMTTVGYGDM 374

  Fly   449 RPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQNFNHVTSCPYLPGTLG 513
            .|:.:.||||||||||||||||||||||||||||||||||||.|| ||| :.||| |...|.:.|
 Frog   375 YPMTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDHEE-QSQ-YTHVT-CGQQPSSYG 436

  Fly   514 QHMKKSSLSES--SSDMM---DLDD 533
            . :|||...:|  .||.|   :|||
 Frog   437 D-LKKSESKQSFNRSDYMESEELDD 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 74/87 (85%)
BTB 99..182 CDD:197585 71/82 (87%)
Ion_trans 274..488 CDD:278921 160/213 (75%)
Ion_trans_2 403..479 CDD:285168 60/75 (80%)
kcna6XP_004912861.1 BTB_POZ 35..161 CDD:365784 104/125 (83%)
Ion_trans 207..414 CDD:366146 160/221 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 361 1.000 Domainoid score I949
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 624 1.000 Inparanoid score I853
OMA 1 1.010 - - QHG48093
OrthoDB 1 1.010 - - D307298at33208
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 1 1.000 - - otm49432
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.080

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