DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcns1

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_002938059.3 Gene:kcns1 / 100492665 XenbaseID:XB-GENE-6051189 Length:451 Species:Xenopus tropicalis


Alignment Length:485 Identity:147/485 - (30%)
Similarity:247/485 - (50%) Gaps:93/485 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 DHDFCERVVINVSGLRFETQLRTLNQFPDTLLG-----DPARRLRY----FDPLRNEYFFDRSRP 147
            ||.    :.|||.|::......||.|||||.||     |....:..    :|.:..|::|||:..
 Frog    15 DHS----ININVGGMKKRISPITLLQFPDTRLGRLLSCDSEESILQICDDYDLVSKEFYFDRNPG 75

  Fly   148 SFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAIN---KFREDEGFIKEEERPLPDNEK 209
            .|..:||:|:: |:|....::....||:||:::.:.:..::   .:|..|..::...|...::..
 Frog    76 LFPYVLYFYET-GKLHMMDDLCAFSFSQEIEYWGISEFFLDSCCSYRYHERKLESRRRNWDEDSD 139

  Fly   210 -----------------------------QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFC 245
                                         ::::||..|.|..|..:::.:.||:.|:|:||...|
 Frog   140 ASSIETSVDEISDFNQDIMYFDNVQCGNLRKRLWLTMENPGYSIPSKIFSFISICVVLISISTMC 204

  Fly   246 LETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFF-LIETLCIIWFTFELTVRFLACPNKLNFCR 309
            :.::||::            :::||..| :.||.. .:|..||.|||||::.|.|..||...|.|
 Frog   205 INSMPEYQ------------QVDEDLAP-VDDPILHKLEYFCISWFTFEVSSRLLLAPNLKKFFR 256

  Fly   310 DVMNVIDIIAIIPYFITL--ATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRI 372
            ..:|:|||::::|::|||  ......:.:..|:.|                 :::|.||:|:||:
 Frog   257 HPLNLIDIVSVLPFYITLFIDLTFGSDYELGNVGK-----------------VVQVFRLMRIFRV 304

  Fly   373 FKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAV 437
            .||:|||.||:.||.|||.|.||:|:|:.:|.:||.:||...|.||...|:. |.:||..:||..
 Frog   305 LKLARHSTGLRSLGATLKHSYREVGILLLYLAVGVSVFSGMAYTAEMDEDTG-FDTIPSCWWWGT 368

  Fly   438 VTMTTVGYGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQNFNHV 502
            |:||||||||:.||.|.||:..|.|.:.|:|.:|||:.:|.:.|::||.|:...|       |.|
 Frog   369 VSMTTVGYGDVVPVTVAGKLAASGCILGGILVVALPITIIFNKFSHFYRRQKALE-------NAV 426

  Fly   503 TSCPYLPGTLGQHMKKSSLSESSSDMMDLD 532
            .:...:|      .:.|::||..:....::
 Frog   427 RNSDRIP------REDSNVSEDKNSEQSVE 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 29/96 (30%)
BTB 99..182 CDD:197585 29/91 (32%)
Ion_trans 274..488 CDD:278921 88/216 (41%)
Ion_trans_2 403..479 CDD:285168 36/75 (48%)
kcns1XP_002938059.3 BTB_POZ_KCNS1 18..123 CDD:349733 30/105 (29%)
Ion_trans 185..420 CDD:395416 101/265 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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