DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcnb2

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_002937117.3 Gene:kcnb2 / 100489419 XenbaseID:XB-GENE-989392 Length:901 Species:Xenopus tropicalis


Alignment Length:582 Identity:190/582 - (32%)
Similarity:295/582 - (50%) Gaps:112/582 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 RVVINVSGLRFETQLRTLNQFPDTLLGDPARRLR-------------YFDPLRNEYFFDRSRPSF 149
            ||.|||.||..|...|||::.|.|.||    :||             .::...|||||||...:|
 Frog    36 RVKINVGGLNHEVLWRTLDRLPRTRLG----KLRDCNTHESLLEVCDDYNLNENEYFFDRHPGAF 96

  Fly   150 DAILYYYQSGGRLRRPVNVPLDVFSEEI----------------KFYELGDQAINKFREDEGFIK 198
            .:||.:|:: |:|.....:....|.:|:                ::::..:|...:.|.:...::
 Frog    97 TSILNFYRT-GKLHMMEEMCALSFGQELDYWGIDEIYLESCCQARYHQKKEQMNEELRREAETLR 160

  Fly   199 EEERPLPDN----EKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFN 259
            |.|....||    ||::|:|.|.|.|.||.||:::||||:..|:||.:...|.|||:.:....|.
 Frog   161 EREGEEFDNTCCPEKRKKLWDLLEKPNSSVAAKILAIISILFIVLSTIALSLNTLPDLQETDEFG 225

  Fly   260 TTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYF 324
            ...:..::..            :|.:||.|||.|..:|||:.|||..|.:..:|:||::||:||:
 Frog   226 QPNDNPQLAH------------VEAVCIAWFTMEYLLRFLSSPNKWKFFKGPLNIIDLLAILPYY 278

  Fly   325 ITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSL-AILRVIRLVRVFRIFKLSRHSKGLQILGRT 388
            :|:.                ::..:||..|..:: .::::.|::|:.||.||:|||.|||.||.|
 Frog   279 VTIF----------------LTESNKSVLQFQNVRRVVQIFRIMRILRILKLARHSTGLQSLGFT 327

  Fly   389 LKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMRPVGV 453
            |:.|..||||||.||.:|:::|||.|:|||...|::.|.|||..||||.:|||||||||:.|..:
 Frog   328 LRRSYNELGLLILFLAMGIMIFSSLVFFAEKDEDATKFTSIPASFWWATITMTTVGYGDIYPKTL 392

  Fly   454 WGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQNFNHVTSCPYLPGTLGQHMKK 518
            .|||||.||.|||||.||||:|:||:||:.||..:..||:.                     :|:
 Frog   393 LGKIVGGLCCIAGVLVIALPIPIIVNNFSEFYKEQKRQEKA---------------------IKR 436

  Fly   519 SSLSE-----SSSDMMDLDDGVESTPGLTETHPGRSAVAPFLGAQQQQQQPVASSLSMSIDKQLQ 578
            ....|     .|...|:|.|....:..|.:....:||     ....:.::|..:.||.|..|..:
 Frog   437 REALERAKRNGSIVSMNLKDAFARSMELIDVVVDKSA-----DGSNKMEKPSDNHLSPSRWKWSR 496

  Fly   579 HPLQQLTQTQLYQQQQQQ------QQQQQNGFKQQQQQTQQQLQQ-------QQSH-TINAS 626
            ..|.:.:..:.:..:.|:      |:|..|.....|..:.|:|::       .||| ::|:|
 Frog   497 RTLSETSSNKSFDNKYQEVSQHDSQEQLNNASSSPQHLSAQKLEELYNEITKAQSHPSVNSS 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 32/116 (28%)
BTB 99..182 CDD:197585 31/111 (28%)
Ion_trans 274..488 CDD:278921 100/214 (47%)
Ion_trans_2 403..479 CDD:285168 46/75 (61%)
kcnb2XP_002937117.3 BTB_POZ_KCNB2 19..145 CDD:349719 32/113 (28%)
Ion_trans 192..428 CDD:366146 113/263 (43%)
Kv2channel 471..755 CDD:367541 20/93 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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