DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcnv1

DIOPT Version :10

Sequence 1:NP_728123.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_002939028.1 Gene:kcnv1 / 100487006 XenbaseID:XB-GENE-956997 Length:503 Species:Xenopus tropicalis


Alignment Length:488 Identity:146/488 - (29%)
Similarity:223/488 - (45%) Gaps:119/488 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 GSLPKLSSQDEEGG------AGHGFGGGP--------------------QHFEPIPHDHDFCERV 99
            |.:|      ||||      .|...|..|                    ..:.|.|.||     :
 Frog     8 GDIP------EEGGLGVATQCGESAGKVPASSRDGDSDSALSLDSSVFCSDYFPAPKDH-----L 61

  Fly   100 VINVSGLRFETQLRTLNQFPDTLLG--------------DPARRLRYFDPLRNEYFFDRSRPSFD 150
            .|||.|.||....:.|:..|:|.||              |.|      :.:.||||||||...|.
 Frog    62 TINVGGSRFILSHKVLSNHPETRLGRLVSSGGQEVYELCDDA------NLMDNEYFFDRSSQMFK 120

  Fly   151 AILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAIN----------KFREDEGFIKEEERPLP 205
            .|:.:|:: |.|.....:....|.:||:::.:.:..|:          |...:...||::|..:.
 Frog   121 YIMNFYKT-GHLHVMEELCAVSFLQEIQYWGIDELNIDLCCRERYYRKKLMSESLDIKKDEEEIE 184

  Fly   206 DNEK----------QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNT 260
            ..|:          ::.:|.:.|.|.||.||:....:|:..|::||....|.:            
 Frog   185 AEEEDFSGVVFEHFRQTLWDILEKPGSSVAAKTFGTLSMTFIVISIANMVLIS------------ 237

  Fly   261 TTNGTKIEEDEVPDITDPFF-LIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYF 324
                     .|:..|..|.. .:|.:||.|||.||.:|||...:|..|.|.|:|:|||:||:|::
 Frog   238 ---------SEMNSIDPPLLNALEYICITWFTLELALRFLCVKHKCRFLRSVVNIIDIVAILPFY 293

  Fly   325 ITL--ATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGR 387
            |||  ..:..|..:..|:.:                 |::.:||:|..|:.||.|||.||:.||.
 Frog   294 ITLIVENLYGESTELENVGR-----------------IVQSLRLLRSLRMLKLGRHSTGLKSLGM 341

  Fly   388 TLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGYGDMTPVG 452
            |:.....|:|||:.||.:|:.:||:..|..|....::.|.|:|:|:|||..:||||||||:.|..
 Frog   342 TIAQCYEEVGLLLLFLSVGISIFSALEYAVEHNIPDTTFTSVPNAWWWATTSMTTVGYGDIRPDT 406

  Fly   453 VWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 485
            .:||||..||.::|:|.:|||:.:|...|...|
 Frog   407 TFGKIVAFLCILSGILVLALPIAIINDRFAACY 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_728123.1 BTB_POZ 97..223 CDD:453885 38/159 (24%)
Ion_trans 226..488 CDD:459842 92/263 (35%)
kcnv1XP_002939028.1 BTB_POZ_KCNV1 61..169 CDD:349731 30/114 (26%)
Ion_trans 215..439 CDD:459842 91/261 (35%)

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