DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and kcnv1

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_002939028.1 Gene:kcnv1 / 100487006 XenbaseID:XB-GENE-956997 Length:503 Species:Xenopus tropicalis


Alignment Length:488 Identity:147/488 - (30%)
Similarity:223/488 - (45%) Gaps:115/488 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 LPKLSSQD--EEGG------AGHGFGGGP--------------------QHFEPIPHDHDFCERV 99
            ||.:...|  ||||      .|...|..|                    ..:.|.|.||     :
 Frog     2 LPHIFCGDIPEEGGLGVATQCGESAGKVPASSRDGDSDSALSLDSSVFCSDYFPAPKDH-----L 61

  Fly   100 VINVSGLRFETQLRTLNQFPDTLLG--------------DPARRLRYFDPLRNEYFFDRSRPSFD 150
            .|||.|.||....:.|:..|:|.||              |.|      :.:.||||||||...|.
 Frog    62 TINVGGSRFILSHKVLSNHPETRLGRLVSSGGQEVYELCDDA------NLMDNEYFFDRSSQMFK 120

  Fly   151 AILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAIN----------KFREDEGFIKEEERPLP 205
            .|:.:|:: |.|.....:....|.:||:::.:.:..|:          |...:...||::|..:.
 Frog   121 YIMNFYKT-GHLHVMEELCAVSFLQEIQYWGIDELNIDLCCRERYYRKKLMSESLDIKKDEEEIE 184

  Fly   206 DNEK----------QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNT 260
            ..|:          ::.:|.:.|.|.||.||:....:|:..|::||....|.:            
 Frog   185 AEEEDFSGVVFEHFRQTLWDILEKPGSSVAAKTFGTLSMTFIVISIANMVLIS------------ 237

  Fly   261 TTNGTKIEEDEVPDITDPFF-LIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYF 324
                     .|:..|..|.. .:|.:||.|||.||.:|||...:|..|.|.|:|:|||:||:|::
 Frog   238 ---------SEMNSIDPPLLNALEYICITWFTLELALRFLCVKHKCRFLRSVVNIIDIVAILPFY 293

  Fly   325 ITL--ATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGR 387
            |||  ..:..|..:..|:.:                 |::.:||:|..|:.||.|||.||:.||.
 Frog   294 ITLIVENLYGESTELENVGR-----------------IVQSLRLLRSLRMLKLGRHSTGLKSLGM 341

  Fly   388 TLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMRPVG 452
            |:.....|:|||:.||.:|:.:||:..|..|.....:.|.|:|:.:|||..:||||||||:||..
 Frog   342 TIAQCYEEVGLLLLFLSVGISIFSALEYAVEHNIPDTTFTSVPNAWWWATTSMTTVGYGDIRPDT 406

  Fly   453 VWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 485
            .:||||..||.::|:|.:|||:.:|...|...|
 Frog   407 TFGKIVAFLCILSGILVLALPIAIINDRFAACY 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 29/101 (29%)
BTB 99..182 CDD:197585 29/96 (30%)
Ion_trans 274..488 CDD:278921 85/215 (40%)
Ion_trans_2 403..479 CDD:285168 34/75 (45%)
kcnv1XP_002939028.1 BTB_POZ_KCNV1 61..169 CDD:349731 30/114 (26%)
Ion_trans 215..439 CDD:366146 91/261 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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