DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcnc1b

DIOPT Version :10

Sequence 1:NP_728123.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001182126.2 Gene:kcnc1b / 100334453 ZFINID:ZDB-GENE-080414-3 Length:598 Species:Danio rerio


Alignment Length:484 Identity:179/484 - (36%)
Similarity:252/484 - (52%) Gaps:98/484 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 ERVVINVSGLRFETQLRTLNQFPDTLLG-----DPARRLRYFDPLRNEYFFDRSRPSFDAILYYY 156
            :|:||||.|::.:|...||...|.|.|.     |......| |....|:||||....|..||.||
Zfish     8 DRIVINVGGIKHQTYRSTLRTLPGTRLSWLAEPDAPNNFDY-DANIGEFFFDRHPSVFAHILNYY 71

  Fly   157 QSGGRLRRPVNVPLDVFSEEIKFYEL------------------GDQAINKFR-----------E 192
            :: |:|..|.:|...::.||:.|:.:                  .::|::.|.           |
Zfish    72 RT-GKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHREAEEALDSFTGGALDLGHDDPE 135

  Fly   193 DEGFIKEEE--------RPL-----PDNEK------QRKVWLLFEYPESSQAARVVAIISVFVIL 238
            .||.::..|        |.|     |||..      |:|.|.|||.|.||:.||.||..|:|.||
Zfish   136 PEGVVEAAEGDEGVEMTRRLAQGDSPDNRSGRWSRWQKKAWALFEDPYSSKYARWVAFASLFFIL 200

  Fly   239 LSIVIFCLETLPEFKHYKVFNTTTNGTK--IEEDEVPDITDP-------FFLIETLCIIWFTFEL 294
            :||..|||||      ::.||...|.|:  :|.:|..:...|       ...||.:|::|||||.
Zfish   201 VSITTFCLET------HEAFNPIINRTETYMEGNETVERIFPETETMVQLTYIEGVCVVWFTFEF 259

  Fly   295 TVRFLACPNKLNFCRDVMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMS-L 358
            .:|...||:||.|.|:.:|:||.:||:|:::                  .|.....||..|.. |
Zfish   260 IIRVTTCPDKLKFLRNTLNIIDFVAILPFYL------------------EVGLSGLSSKAAKDVL 306

  Fly   359 AILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEA---- 419
            ..|||:|.||:.|||||:||..||::||.||:||..|..|||.||.:||::|::.:|:||.    
Zfish   307 GFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFILLIIFLALGVLIFATMIYYAERIGRN 371

  Fly   420 -----GSENSFFKSIPDAFWWAVVTMTTVGYGDMTPVGVWGKIVGSLCAIAGVLTIALPVPVIVS 479
                 .|.::.||:||..||||||||||:|||||.|....|.:||:|||:|||||||:||||||:
Zfish   372 PNDPDASSDTHFKNIPIGFWWAVVTMTTLGYGDMYPQTTSGMLVGALCALAGVLTIAMPVPVIVN 436

  Fly   480 NFNYFYHRETDQEEMQSQNFNHVTSCPYL 508
            ||..:|.....::::..:...|:...|.|
Zfish   437 NFGMYYSLAMAKQKLPKKKNKHIRRPPLL 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_728123.1 BTB_POZ 97..223 CDD:453885 50/178 (28%)
Ion_trans 226..488 CDD:459842 124/280 (44%)
kcnc1bNP_001182126.2 None

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