DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and LOC100332207

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_005171693.2 Gene:LOC100332207 / 100332207 -ID:- Length:534 Species:Danio rerio


Alignment Length:567 Identity:296/567 - (52%)
Similarity:373/567 - (65%) Gaps:70/567 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 GLGEDRQHRKKQQQQQQHQKEQLEQKEEQKKIAERKLQLREQQLQRNSLDGYGSLPKLSSQDEEG 73
            |.||:..:.|.:.:.|..:    |..|..||:.:          |||..: .|...|...:.|..
Zfish     4 GEGEEESNSKMEDKTQTEE----EVSESDKKLKD----------QRNKAE-KGDKEKGEKKRENR 53

  Fly    74 GAGHGFGGGPQHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRN 138
            .:|..:.||          ....||:.|||||:|:|||:|||.||||:|||||.|||||||||||
Zfish    54 RSGSTWRGG----------WALSERLAINVSGMRYETQIRTLAQFPDSLLGDPRRRLRYFDPLRN 108

  Fly   139 EYFFDRSRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKFREDEGFIKEEERP 203
            |.|.||:|..||||||:||||||||||.|||||||.:|::|||||:..:.:|:|||||.|||.||
Zfish   109 EIFLDRNRFCFDAILYFYQSGGRLRRPANVPLDVFMDELRFYELGEDIMARFKEDEGFPKEEPRP 173

  Fly   204 LPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFK---------HYKVFN 259
            ||::|.|||:|:|||:||||..||::|||||.||::||:||||||||:|:         .|:...
Zfish   174 LPESEFQRKIWMLFEHPESSGGARIIAIISVMVIVVSILIFCLETLPDFRVEKEQREKMAYEAHL 238

  Fly   260 TTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYF 324
            ...|.:.|....  ...|||||:||:||.||:|||.:||...|||:.|.:||||:||..||||||
Zfish   239 AGNNTSHISMSS--PFHDPFFLVETMCICWFSFELIMRFTCSPNKMVFFKDVMNIIDFFAIIPYF 301

  Fly   325 ITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTL 389
            :||.|.:|               :.|.:..:|||||:|||||||||||||||||||||||||:||
Zfish   302 VTLGTELA---------------KSKGATPSMSLAIVRVIRLVRVFRIFKLSRHSKGLQILGQTL 351

  Fly   390 KASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMRPVGVW 454
            |||:|||.||||||||||:|||||.||||..:..:.|.|||:.||||||:|||||||||.||.|.
Zfish   352 KASLRELALLIFFLFIGVILFSSAAYFAEVDNPETAFTSIPEAFWWAVVSMTTVGYGDMYPVTVG 416

  Fly   455 GKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQNFNHVTSCPYLP----GTLGQH 515
            ||:|||:|||||||||:||||||||||:||||||.:.|:  :|.:.||::..:..    |..|::
Zfish   417 GKLVGSMCAIAGVLTISLPVPVIVSNFSYFYHREMECED--NQEYTHVSTSLWEEEEEGGEDGEN 479

  Fly   516 MKKSSLSESSSDMMDLDDGV----ESTP-------GLTETHPGRSAV 551
            .::.  .....|.:.|:.|.    ..||       ||....||..:|
Zfish   480 GEEG--PGEQGDQVPLEGGTAYRGNCTPLNGTLLAGLCSGKPGEQSV 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 66/87 (76%)
BTB 99..182 CDD:197585 63/82 (77%)
Ion_trans 274..488 CDD:278921 144/213 (68%)
Ion_trans_2 403..479 CDD:285168 56/75 (75%)
LOC100332207XP_005171693.2 BTB_2 71..160 CDD:308049 66/88 (75%)
Ion_trans 196..451 CDD:306908 168/271 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D307298at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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