DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and LOC100330283

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_005174156.1 Gene:LOC100330283 / 100330283 -ID:- Length:515 Species:Danio rerio


Alignment Length:490 Identity:324/490 - (66%)
Similarity:379/490 - (77%) Gaps:47/490 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 NSLDGYGSLPKLSSQDEEGGAGHGFGGGPQHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFP 119
            |.|:...:||           ||   ...:.:||   ||:.|||||||:|||||||||:||:|||
Zfish    41 NMLEESAALP-----------GH---HSLERYEP---DHECCERVVINISGLRFETQLKTLSQFP 88

  Fly   120 DTLLGDPARRLRYFDPLRNEYFFDRSRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGD 184
            :||||||.:|:||||||||||||||:||||||||||||||||:|||||||:|:|||||:|||||:
Zfish    89 ETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRIRRPVNVPIDIFSEEIRFYELGE 153

  Fly   185 QAINKFREDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETL 249
            :|:.|||||||||||||||||.||.||:|||||||||||..||.:||:||.|||:||||||||||
Zfish   154 EAMEKFREDEGFIKEEERPLPTNEFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLETL 218

  Fly   250 PEFKHYKVFNT---TTNGTKIEEDEVPDIT----DPFFLIETLCIIWFTFELTVRFLACPNKLNF 307
            |||:. .:.:|   ..|||      :|.:|    ||||::||||||||:|||.|||.|||:|..|
Zfish   219 PEFRD-DIDSTVAPVVNGT------IPYLTSPFSDPFFVVETLCIIWFSFELLVRFFACPSKATF 276

  Fly   308 CRDVMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRI 372
            .:::||:|||:|||||||||.|.:||.:.              :..|||||||||||||||||||
Zfish   277 SKNIMNIIDIVAIIPYFITLGTELAERQG--------------NGQQAMSLAILRVIRLVRVFRI 327

  Fly   373 FKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAV 437
            ||||||||||||||:||||||||||||||||||||:|||||||||||....|.|.||||.|||||
Zfish   328 FKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADDPDSGFNSIPDAFWWAV 392

  Fly   438 VTMTTVGYGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQNFNHV 502
            |||||||||||.||.:.|||||||||||||||||||||||||||||||||||:.|| |:| :.|:
Zfish   393 VTMTTVGYGDMHPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEE-QAQ-YLHI 455

  Fly   503 TSCPYLPGTLGQHMKKSSLSESSSDMMDLDDGVES 537
            .|...|..:......:|:.|.|.|:.|.:::|:.|
Zfish   456 GSLQPLSSSGELKKTRSTSSVSKSEYMVIEEGINS 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 73/87 (84%)
BTB 99..182 CDD:197585 70/82 (85%)
Ion_trans 274..488 CDD:278921 161/217 (74%)
Ion_trans_2 403..479 CDD:285168 63/75 (84%)
LOC100330283XP_005174156.1 BTB_2 68..159 CDD:280393 74/90 (82%)
BTB 68..151 CDD:197585 70/82 (85%)
Ion_trans 238..443 CDD:278921 162/218 (74%)
Ion_trans_2 357..434 CDD:285168 64/76 (84%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H128570
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D307298at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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