DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and kcna3a

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_005172172.1 Gene:kcna3a / 100150068 ZFINID:ZDB-GENE-130530-873 Length:515 Species:Danio rerio


Alignment Length:484 Identity:325/484 - (67%)
Similarity:374/484 - (77%) Gaps:34/484 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 NSLDGYGSLPKLSSQDEEGGAGHGFGGGPQHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFP 119
            |.|:...:||...|.|              .:||   ||:.|||||||:|||||||||:|.||||
Zfish    40 NMLEETAALPSHLSLD--------------RYEP---DHECCERVVINISGLRFETQLKTFNQFP 87

  Fly   120 DTLLGDPARRLRYFDPLRNEYFFDRSRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGD 184
            |||||||.:|:||||||||||||||:||||||||||||||||:|||||||:|:|||||:||:||:
Zfish    88 DTLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRIRRPVNVPIDIFSEEIRFYQLGE 152

  Fly   185 QAINKFREDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETL 249
            :|:.||||||||||||||||||:|.||:|||||||||||..||.:||:||.|||:||||||||||
Zfish   153 EAMEKFREDEGFIKEEERPLPDHEFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLETL 217

  Fly   250 PEFKHYKVFNTTTNGTKIEEDEVPD-ITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMN 313
            |||:..|...|.:....:....|.. .|||||:|||||||||:|||.|||.|||:|..|.:::||
Zfish   218 PEFRDDKDPTTVSPIANVTGPFVSSTFTDPFFVIETLCIIWFSFELLVRFFACPSKATFSKNIMN 282

  Fly   314 VIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRH 378
            :|||:|||||||||.|.:||.:.              :..|||||||||||||||||||||||||
Zfish   283 IIDIVAIIPYFITLGTELAERQG--------------NGQQAMSLAILRVIRLVRVFRIFKLSRH 333

  Fly   379 SKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTV 443
            ||||||||:||||||||||||||||||||:|||||||||||...:|.|.||||.|||||||||||
Zfish   334 SKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADDPTSSFSSIPDAFWWAVVTMTTV 398

  Fly   444 GYGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQSQNFNHVTSCPYL 508
            |||||.||.:.||||||||||||||||||||||||||||||||||||.||  ...:.||.||.:|
Zfish   399 GYGDMHPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDGEE--HAQYLHVGSCQHL 461

  Fly   509 PGTLGQHMKKSSLSESSSDMMDLDDGVES 537
            ..|......:|:.|.|.|:.|.:::|:.|
Zfish   462 NSTEDLKRTQSTSSLSKSEYMVIEEGINS 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 73/87 (84%)
BTB 99..182 CDD:197585 71/82 (87%)
Ion_trans 274..488 CDD:278921 162/214 (76%)
Ion_trans_2 403..479 CDD:285168 63/75 (84%)
kcna3aXP_005172172.1 BTB_2 67..158 CDD:308049 74/90 (82%)
Ion_trans 194..443 CDD:306908 187/262 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H128570
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D307298at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3654
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.040

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