DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sh and kcna3

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_004910792.1 Gene:kcna3 / 100145813 XenbaseID:XB-GENE-1010662 Length:526 Species:Xenopus tropicalis


Alignment Length:504 Identity:332/504 - (65%)
Similarity:384/504 - (76%) Gaps:51/504 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 EQQLQR-----NSLDGYGSLPKLSSQDEEGGAGHGFGGGPQHFEPIPHDHDFCERVVINVSGLRF 108
            ||::..     |.|:...:||           ||   ...:.:|  ..||:.|||||||:|||||
 Frog    33 EQEIMTVVACDNILEEAAALP-----------GH---HSSEAYE--QEDHECCERVVINISGLRF 81

  Fly   109 ETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDRSRPSFDAILYYYQSGGRLRRPVNVPLDVF 173
            ||||:||.||||||||||.:|:||||||||||||||:||||||||||||||||:|||||||:|:|
 Frog    82 ETQLKTLAQFPDTLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRIRRPVNVPIDIF 146

  Fly   174 SEEIKFYELGDQAINKFREDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVIL 238
            ||||:|||||::|:.|||||||||:|||||||.||.||:|||||||||||..||.:||:||.|||
 Frog   147 SEEIRFYELGEEAMEKFREDEGFIREEERPLPPNEFQRQVWLLFEYPESSGPARGIAIVSVLVIL 211

  Fly   239 LSIVIFCLETLPEFKHYKVFNTTT----NGTKIEEDEVPDI----TDPFFLIETLCIIWFTFELT 295
            :|||||||||||||:..|.::.|.    |||.      |.|    |||||::||||||||:|||.
 Frog   212 ISIVIFCLETLPEFRDDKEYSGTALPPGNGTG------PYISSSFTDPFFVVETLCIIWFSFELL 270

  Fly   296 VRFLACPNKLNFCRDVMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAI 360
            |||.|||:|..||:::||:|||:|||||||||.|.:||.:.              :..|||||||
 Frog   271 VRFFACPSKATFCKNIMNIIDIVAIIPYFITLGTELAERQG--------------NGQQAMSLAI 321

  Fly   361 LRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAEAGSDSSF 425
            ||||||||||||||||||||||||||:||||||||||||||||||||:|||||||||||...||.
 Frog   322 LRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADDPSSG 386

  Fly   426 FKSIPDGFWWAVVTMTTVGYGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETD 490
            |.||||.||||||||||||||||.||.:.|||||||||||||||||||||||||||||||||||:
 Frog   387 FNSIPDAFWWAVVTMTTVGYGDMHPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE 451

  Fly   491 QEEMQSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMDLDDGVESTP 539
            .|| |:| :.||.||.:|.........:|:.|.|.|:.|.:::||...|
 Frog   452 GEE-QAQ-YLHVGSCQHLSSNEDLKKARSNSSLSKSEYMVIEEGVSPGP 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 74/87 (85%)
BTB 99..182 CDD:197585 71/82 (87%)
Ion_trans 274..488 CDD:278921 164/217 (76%)
Ion_trans_2 403..479 CDD:285168 64/75 (85%)
kcna3XP_004910792.1 BTB_POZ 70..196 CDD:365784 106/125 (85%)
Ion_trans 199..449 CDD:366146 192/269 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H128570
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D307298at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11537
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.110

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