DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcng1

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001096675.1 Gene:kcng1 / 100125206 XenbaseID:XB-GENE-1011042 Length:508 Species:Xenopus tropicalis


Alignment Length:478 Identity:149/478 - (31%)
Similarity:236/478 - (49%) Gaps:76/478 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 HDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRY-------------FDPLRNEYFF 142
            |..|.....:|||.|.|:.....||.:||.|.||    :|:.             :|...||:||
 Frog    56 HPDDRKHHAIINVGGFRYLLPWTTLEEFPLTRLG----QLKLCSNFDEILSICDDYDVTCNEFFF 116

  Fly   143 DRSRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGD------------QAINKFRE--- 192
            ||:..:|..||.:.|. |:||....:....|.||:.::.:.:            |.:.:|.|   
 Frog   117 DRNPGAFRTILTFLQV-GKLRLLREMCALSFQEELLYWGIEEDNLEWCCKRRYIQKMEEFAELNL 180

  Fly   193 -DEGFIKEEERPLPDNEKQRKVWL-----LFEYPESSQAARVVAIISVFVILLSIVIFCLETLPE 251
             :|..|:.|....|::|.:..:.:     :.|.|:|....::.|.:||..:.::.|...:.|:|:
 Frog   181 REEELIENENASEPEDESKLDICMRHLGDMVEKPQSGLPGKIFACLSVLFVTITAVNLSISTMPD 245

  Fly   252 FKHYKVFNTTTNGTKIEEDE---VPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMN 313
            .:              ||:|   ...:....|::|::|:.||:.|..:||:..|:|..|.|..:|
 Frog   246 LR--------------EEEEKGVCSKMCYNIFIVESVCVGWFSLEFLLRFIQAPSKFAFIRRPLN 296

  Fly   314 VIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRH 378
            :|||:||:||:|||  ||....|....|.:..|..||..      .:||::|.:|:..:.:|:||
 Frog   297 LIDIVAILPYYITL--VVDNTSDGQKKPGSGNSYLDKVG------LVLRILRALRILYVMRLARH 353

  Fly   379 SKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAE-AGSDSSFFKSIPDGFWWAVVTMTT 442
            |.|||.||.|.:...||.|||:.||.:.:.||:..:|..| ..:||..|.|||..:||||:||||
 Frog   354 SLGLQTLGLTARRCTREFGLLLLFLCVAIALFAPLLYLIENEMADSQEFTSIPACYWWAVITMTT 418

  Fly   443 VGYGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY-HRETDQEEMQSQNFNHVTSCP 506
            ||||||.|..:.|::|.....::|:|.:|.||..|...|:..| ..:.:||.:..:      ...
 Frog   419 VGYGDMVPRSIPGQVVALSSILSGILLMAFPVTSIFHTFSRSYIELKQEQERLMCR------KAQ 477

  Fly   507 YLPGTLGQHMKKSSLSESSSDMM 529
            .|..|..|   .||:|: .|||:
 Frog   478 LLMKTKSQ---MSSISQ-GSDML 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 31/112 (28%)
BTB 99..182 CDD:197585 30/95 (32%)
Ion_trans 274..488 CDD:278921 86/215 (40%)
Ion_trans_2 403..479 CDD:285168 34/76 (45%)
kcng1NP_001096675.1 BTB_POZ_KCNG1_2 59..172 CDD:349728 32/117 (27%)
Ion_trans 221..461 CDD:366146 94/261 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000074
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.000

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