DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sh and kcnd3

DIOPT Version :9

Sequence 1:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001096411.1 Gene:kcnd3 / 100125015 XenbaseID:XB-GENE-5867971 Length:653 Species:Xenopus tropicalis


Alignment Length:575 Identity:186/575 - (32%)
Similarity:292/575 - (50%) Gaps:102/575 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 ERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDRSRPSFDAILYYYQSGGR 161
            |.:::||||.||:|...||.::||||||...:.. :|:....||||||....|..||.:|:: |:
 Frog    40 EVIILNVSGRRFQTWRTTLERYPDTLLGSTEKEF-FFNEETKEYFFDRDPEVFRCILNFYRT-GK 102

  Fly   162 LRRPVNVPLDVFSEEIKFYE-----LGDQAINKFRE----------DEGFIKEEERPLPDNEKQR 211
            |..|....:..:.||:.||.     :||....::::          |:...:..:..:|....::
 Frog   103 LHYPRYECISAYDEELAFYGILPEIIGDCCYEEYKDRKRENAERLMDDNEFENNQEAMPSLTLRQ 167

  Fly   212 KVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVP--- 273
            .:|..||.|.:|..|.|...::.|.|.:|::...:||:|            .||.....|:|   
 Frog   168 TMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVP------------CGTVPGNKELPCGE 220

  Fly   274 --DITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYFITLATVVAEEED 336
              |:.  ||.::|.|::.||.|..:|..|.|::..|.|.||::||::||:||:|.|.        
 Frog   221 RYDVA--FFCLDTACVMIFTVEYLLRLFAAPSRYRFMRSVMSIIDVVAIMPYYIGLV-------- 275

  Fly   337 TLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRELGLLIF 401
                         .::|:.:|.|.: .:|:.|||||||.||||:||:|||.|||:...|||.|:|
 Frog   276 -------------MTNNEDVSGAFV-TLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLF 326

  Fly   402 FLFIGVVLFSSAVYFAEAGSDSSFFKSIPDGFWWAVVTMTTVGYGDMRPVGVWGKIVGSLCAIAG 466
            .|.:.:::|::.:::||.||.||.|.|||..||:.:|||||:|||||.|..:.|||.||:|:::|
 Frog   327 SLTMAIIIFATVMFYAEKGSSSSKFTSIPASFWYTIVTMTTLGYGDMVPKTIAGKIFGSICSLSG 391

  Fly   467 VLTIALPVPVIVSNFNYFYHRETDQEEMQSQNFNHV---------TSCPYLPGTLGQHMKKSSLS 522
            ||.||||||||||||:..||:....::.::|....:         :|..||      |.|::.| 
 Frog   392 VLVIALPVPVIVSNFSRIYHQNQRADKRRAQKKARLARIRVAKTGSSTAYL------HSKRNGL- 449

  Fly   523 ESSSDMMDLDDGVESTPGLTETHPGRSAVAPFLGAQQQQQQPVASSLSMSIDKQLQHPLQQLTQT 587
                    |::.:|......|.|.|:||                 ||..|....|.|.|::.|..
 Frog   450 --------LNEALELMGSTEEPHIGKSA-----------------SLIESQHHHLLHCLEKTTGL 489

  Fly   588 QLYQQQQQQQQQQQNGFKQQQQQTQQQLQQ--QQSHTINASAAAATSGSGSSGLT 640
            . |.........:.:..|..:...:|..:|  ::|...|..::.:.|.|.:.|||
 Frog   490 S-YLVDDPLLSVRTSTMKNHEFMDEQMFEQNCRESSMQNYPSSRSPSLSSNHGLT 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShNP_001303569.1 BTB_2 99..187 CDD:280393 35/92 (38%)
BTB 99..182 CDD:197585 33/87 (38%)
Ion_trans 274..488 CDD:278921 99/213 (46%)
Ion_trans_2 403..479 CDD:285168 42/75 (56%)
kcnd3NP_001096411.1 Shal-type 3..28 CDD:288455
BTB 42..139 CDD:197585 35/98 (36%)
BTB_2 42..131 CDD:280393 34/90 (38%)
Ion_trans 217..412 CDD:278921 99/218 (45%)
Ion_trans_2 328..408 CDD:285168 46/79 (58%)
DUF3399 442..563 CDD:288712 29/135 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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