DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps4 and SAP1

DIOPT Version :10

Sequence 1:NP_573258.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_010966.1 Gene:SAP1 / 856771 SGDID:S000000849 Length:897 Species:Saccharomyces cerevisiae


Alignment Length:431 Identity:171/431 - (39%)
Similarity:224/431 - (51%) Gaps:113/431 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 KKPIKEGGESSAK---------------------DDKDKKSDSDDEDGDDPE--KKKLQSKLED- 120
            |||.|....|.:|                     :|..:.:.|.:|..::||  ||.|:..||| 
Yeast   511 KKPSKNQTTSMSKTNRKIPAQKKIGSPKIEDVGTEDATEHATSLNEQREEPEIDKKVLREILEDE 575

  Fly   121 ------------------AIVIEKPKVQWSDVAGLDAAKEALKEAVILPIKFPQLFTGKRIPWKG 167
                              .||:...:|.|.|:|||::||.:|||||:.|...|.||.|.|.|.:|
Yeast   576 IIDSLQGVDRQAAKQIFAEIVVHGDEVHWDDIAGLESAKYSLKEAVVYPFLRPDLFRGLREPVRG 640

  Fly   168 ILLFGPPGTGKSYLAKAVATEANRSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFID 232
            :||||||||||:.||:|||||:: |||||:|:|.|.||:||||||||:.||.:|::..|||||:|
Yeast   641 MLLFGPPGTGKTMLARAVATESH-STFFSISASSLTSKYLGESEKLVRALFAIAKKLSPSIIFVD 704

  Fly   233 EIDSMCSAR-SDNENDSVRRIKTEFLVQMQGV-------------GNDTDG------ILVLGATN 277
            ||||:..:| ::|||:|.||||.|||||...:             .:||:|      :|||.|||
Yeast   705 EIDSIMGSRNNENENESSRRIKNEFLVQWSSLSSAAAGSNKSNTNNSDTNGDEDDTRVLVLAATN 769

  Fly   278 IPWVLDSAIRRRFEKRIYIPLPEAHARLVMFKIHLGNTTHVLTEQDLKELAGKTEGYSGADISIV 342
            :||.:|.|.||||.:|.||||||...|.|.||..|.:..|.|||.|..||...||||||:||:.:
Yeast   770 LPWSIDEAARRRFVRRQYIPLPEDQTRHVQFKKLLSHQKHTLTESDFDELVKITEGYSGSDITSL 834

  Fly   343 VRDALMEPVRKVQTATHFKRVSGPSPTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSDKLFEP-- 405
            .:||.|.|:|                        ||                    .|||.|.  
Yeast   835 AKDAAMGPLR------------------------DL--------------------GDKLLETER 855

  Fly   406 ----PVTMRDMLKSLSRTKPTVNEDDLKKLRKFTEDFGQEG 442
                |:.:.|...||...||:|::|.|.|..|:...||..|
Yeast   856 EMIRPIGLVDFKNSLVYIKPSVSQDGLVKYEKWASQFGSSG 896

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_573258.1 MIT_VPS4 6..69 CDD:239141
RecA-like_VPS4 126..296 CDD:410929 101/189 (53%)
AAA_lid_3 323..361 CDD:465537 16/37 (43%)
Vps4_C 379..439 CDD:462762 15/65 (23%)
SAP1NP_010966.1 Herpes_BLLF1 <353..543 CDD:282904 6/31 (19%)
McrB <539..>659 CDD:441011 47/119 (39%)
RecA-like_VPS4-like 607..788 CDD:410917 98/181 (54%)
AAA_lid_3 815..850 CDD:465537 19/78 (24%)
Vps4_C <847..893 CDD:462762 15/45 (33%)
Blue background indicates that the domain is not in the aligned region.

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