DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps4 and YTA6

DIOPT Version :10

Sequence 1:NP_573258.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_015251.1 Gene:YTA6 / 856031 SGDID:S000005995 Length:754 Species:Saccharomyces cerevisiae


Alignment Length:390 Identity:153/390 - (39%)
Similarity:214/390 - (54%) Gaps:68/390 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 PIKEGGESSAKDDKDKKSDSDDEDGDDPEKKKLQSKLED------------------AIVIEKPK 128
            |:.....:...:.|..:|.|...|.:......|.|:.||                  .|::...|
Yeast   403 PVLVSATAVPAESKPMRSKSGTPDKESSASSSLDSRKEDILKSVQGVDRNACEQILNEILVTDEK 467

  Fly   129 VQWSDVAGLDAAKEALKEAVILPIKFPQLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANRST 193
            |.|.|:|||..||.:|||||:.|...|.||.|.|.|.:|:||||||||||:.:|||||||:| ||
Yeast   468 VYWEDIAGLRNAKNSLKEAVVYPFLRPDLFKGLREPVRGMLLFGPPGTGKTMIAKAVATESN-ST 531

  Fly   194 FFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSMCSARSDNENDSVRRIKTEFLV 258
            |||||:|.|:||:||||||||:.||.:|::..||||||||||||.:|||||||:|.||||||.|:
Yeast   532 FFSVSASSLLSKYLGESEKLVRALFYMAKKLSPSIIFIDEIDSMLTARSDNENESSRRIKTELLI 596

  Fly   259 QMQGVGNDT-----------DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARLVMFKIHL 312
            |...:.:.|           ..:|||||||:||.:|.|.||||.:::|||||:...||...|..:
Yeast   597 QWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARRRFSRKLYIPLPDYETRLYHLKRLM 661

  Fly   313 GNTTHVLTEQDLKELAGKTEGYSGADISIVVRDALMEPVRKVQTATHFKRVSGPSPTNHEEIVND 377
            ....:.|.:.|.:.:...|||:||:|::.:.::|.|||:|                        |
Yeast   662 AKQKNSLQDLDYELITEMTEGFSGSDLTSLAKEAAMEPIR------------------------D 702

  Fly   378 LLVPCSPGDQGAVEMNWMDVPSDKLFEPPVTMRDMLKSLSRTKPTVNEDDLKKLRKFTEDFGQEG 442
            |      ||:      .|....||:  ..:.::|...:|...|.:|:.:.|:|..:::..||..|
Yeast   703 L------GDK------LMFADFDKI--RGIEIKDFQNALLTIKKSVSSESLQKYEEWSSKFGSNG 753

  Fly   443  442
            Yeast   754  753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_573258.1 MIT_VPS4 6..69 CDD:239141
RecA-like_VPS4 126..296 CDD:410929 106/180 (59%)
AAA_lid_3 323..361 CDD:465537 12/37 (32%)
Vps4_C 379..439 CDD:462762 11/59 (19%)
YTA6NP_015251.1 PTZ00108 <158..412 CDD:240271 1/8 (13%)
RecA-like_VPS4-like 473..645 CDD:410917 102/172 (59%)
AAA_lid_3 670..714 CDD:465537 17/79 (22%)
Vps4_C <718..750 CDD:462762 6/31 (19%)
Blue background indicates that the domain is not in the aligned region.

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