DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vps4 and DAA1

DIOPT Version :10

Sequence 1:NP_573258.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_849842.1 Gene:DAA1 / 842716 AraportID:AT1G64110 Length:829 Species:Arabidopsis thaliana


Alignment Length:401 Identity:140/401 - (34%)
Similarity:199/401 - (49%) Gaps:69/401 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 EKLKEYLKKGKKKPIKEGGESSAKDDKDKKSDSDDEDGDDPEKKKLQSKL--------------- 118
            ||||:..|:...|.:|   ..|.|.:...:|.:.....::|||:....|:               
plant   443 EKLKQKTKEESSKEVK---AESIKPETKTESVTTVSSKEEPEKEAKAEKVTPKAPEVAPDNEFEK 504

  Fly   119 ---EDAIVIEKPKVQWSDVAGLDAAKEALKEAVILPIKFPQLFTGKRI-PWKGILLFGPPGTGKS 179
               .:.|..|:..|.:.|:..||..||:|:|.|:||::.|.||||..: |.:||||||||||||:
plant   505 RIRPEVIPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKT 569

  Fly   180 YLAKAVATEANRSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSMCSARSD- 243
            .||||:|.||..| |.:||.|.:.|||.||.||.|:.||.||.:..|:|||:||:|||...|:. 
plant   570 MLAKAIAKEAGAS-FINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSMLGQRTRV 633

  Fly   244 NENDSVRRIKTEFLVQMQG-VGNDTDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARLVM 307
            .|::::|:||.||:....| :....:.||||.|||.|:.||.||.||||:||.:.||....|..:
plant   634 GEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPAVENREKI 698

  Fly   308 FKIHLGNTTHVLTEQDLKELAGKTEGYSGADISIVVRDALMEPVRK-VQTA----THFKRVSGPS 367
            .:..|.. ..|....|.||||..||||:|:|:..:...|...|||: :|..    |..|:...|:
plant   699 LRTLLAK-EKVDENLDYKELAMMTEGYTGSDLKNLCTTAAYRPVRELIQQERIKDTEKKKQREPT 762

  Fly   368 PTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSDKLFEPPVTMRDMLKSLSRTKPTVNEDDLKKLR 432
            ....|             |:|..|.             .:|:|.:           |..|.|:.:
plant   763 KAGEE-------------DEGKEER-------------VITLRPL-----------NRQDFKEAK 790

  Fly   433 -KFTEDFGQEG 442
             :....|..||
plant   791 NQVAASFAAEG 801

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_573258.1 MIT_VPS4 6..69 CDD:239141 140/401 (35%)
RecA-like_VPS4 126..296 CDD:410929 88/172 (51%)
AAA_lid_3 323..361 CDD:465537 17/42 (40%)
Vps4_C 379..439 CDD:462762 8/60 (13%)
DAA1NP_849842.1 McrB <449..>581 CDD:441011 48/134 (36%)
P-loop containing Nucleoside Triphosphate Hydrolases 522..687 CDD:476819 87/165 (53%)
AAA_lid_3 711..755 CDD:465537 17/43 (40%)

Return to query results.
Submit another query.