DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps4 and AT1G02890

DIOPT Version :10

Sequence 1:NP_573258.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_171788.3 Gene:AT1G02890 / 839507 AraportID:AT1G02890 Length:1246 Species:Arabidopsis thaliana


Alignment Length:366 Identity:121/366 - (33%)
Similarity:197/366 - (53%) Gaps:41/366 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 IKEGGESSAKDDKDKKSDSDDEDGDDPEKKKLQSKLEDAIVIEKPKVQWSDVAGLDAAKEALKEA 147
            |:...:|:.|..||..::::.|       |||   |.|.|......|.:||:..|:..|:.|||.
plant   905 IQNENKSTKKSLKDVVTENEFE-------KKL---LSDVIPPSDIGVSFSDIGALENVKDTLKEL 959

  Fly   148 VILPIKFPQLFTGKRI--PWKGILLFGPPGTGKSYLAKAVATEANRSTFFSVSSSDLMSKWLGES 210
            |:||::.|:||...::  |.|||||||||||||:.|||||||||. :.|.::|.|.:.|||.||.
plant   960 VMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVATEAG-ANFINISMSSITSKWFGEG 1023

  Fly   211 EKLVKNLFELARQHKPSIIFIDEIDSMCSARSD-NENDSVRRIKTEFLVQMQGV-GNDTDGILVL 273
            ||.||.:|.||.:..||:||:||:|||...|.: .|::::|::|.||::...|: ..|.:.:|||
plant  1024 EKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMINWDGLRTKDKERVLVL 1088

  Fly   274 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARLVMFKIHLGNTTHVLTEQDLKELAGKTEGYSGAD 338
            .|||.|:.||.|:.||..:|:.:.||::..|..:..:.|.. ..:..:.||:.:|..|:||||:|
plant  1089 AATNRPFDLDEAVIRRLPRRLMVNLPDSANRSKILSVILAK-EEMAEDVDLEAIANMTDGYSGSD 1152

  Fly   339 ISIVVRDALMEPVRKVQTATHFKRVSGPSPTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSDKLF 403
            :..:...|...|:|::......:|....:...           ..|....:.::.          
plant  1153 LKNLCVTAAHLPIREILEKEKKERSVAQAENR-----------AMPQLYSSTDVR---------- 1196

  Fly   404 EPPVTMRDMLKSLSRTKPTVNED--DLKKLRKFTEDFGQEG 442
              |:.|.|...:..:...:|..|  ::.:|:::.|.:|:.|
plant  1197 --PLNMNDFKTAHDQVCASVASDSSNMNELQQWNELYGEGG 1235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_573258.1 MIT_VPS4 6..69 CDD:239141
RecA-like_VPS4 126..296 CDD:410929 82/173 (47%)
AAA_lid_3 323..361 CDD:465537 12/37 (32%)
Vps4_C 379..439 CDD:462762 8/61 (13%)
AT1G02890NP_171788.3 FHA 124..223 CDD:469597
RecA-like_ATAD1 945..1111 CDD:410928 80/166 (48%)
AAA_lid_3 1135..1175 CDD:465537 12/39 (31%)
Blue background indicates that the domain is not in the aligned region.

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